issues: 1350803561
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id | node_id | number | title | user | state | locked | assignee | milestone | comments | created_at | updated_at | closed_at | author_association | active_lock_reason | draft | pull_request | body | reactions | performed_via_github_app | state_reason | repo | type |
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1350803561 | I_kwDOAMm_X85Qg6Bp | 6953 | DataArray.resample().apply() fails to apply custom function | 28786187 | open | 0 | 5 | 2022-08-25T12:14:04Z | 2022-08-29T12:41:47Z | CONTRIBUTOR | What happened?Hi,
I try to apply a custom function to aggregate a resampled object via For example calculating the median by passing What did you expect to happen?I would expect the median or any other custom function to be calculated for the resampled data.
It seems to work with pure Minimal Complete Verifiable Example```Python import numpy as np import pandas as pd import xarray as xr idx = pd.date_range("2000-01-01", "2000-12-31") data = xr.DataArray(np.random.randn(len(idx)), coords={"index": idx}) data.resample(index="M").apply(np.median) ``` MVCE confirmation
Relevant log output```PythonAttributeError Traceback (most recent call last) Input In [425], in <cell line: 3>() 1 idx = pd.date_range("2000-01-01", "2000-12-31") 2 data = pd.Series(np.random.randn(len(idx)), index=idx).to_xarray() ----> 3 data.resample(index="M", label="left", loffset="15d").apply(np.median) File ~/Work/miniconda3/envs/20211123_py39/lib/python3.9/site-packages/xarray/core/resample.py:279, in DataArrayResample.apply(self, func, args, shortcut, kwargs)
267 """
268 Backward compatible implementation of File ~/Work/miniconda3/envs/20211123_py39/lib/python3.9/site-packages/xarray/core/resample.py:253, in DataArrayResample.map(self, func, args, shortcut, kwargs) 210 """Apply a function to each array in the group and concatenate them 211 together into a new array. 212 (...) 249 The result of splitting, applying and combining this array. 250 """ 251 # TODO: the argument order for Resample doesn't match that for its parent, 252 # GroupBy --> 253 combined = super().map(func, shortcut=shortcut, args=args, kwargs) 255 # If the aggregation function didn't drop the original resampling 256 # dimension, then we need to do so before we can rename the proxy 257 # dimension we used. 258 if self._dim in combined.coords: File ~/Work/miniconda3/envs/20211123_py39/lib/python3.9/site-packages/xarray/core/groupby.py:1095, in DataArrayGroupByBase.map(self, func, args, shortcut, kwargs) 1093 grouped = self._iter_grouped_shortcut() if shortcut else self._iter_grouped() 1094 applied = (maybe_wrap_array(arr, func(arr, *args, kwargs)) for arr in grouped) -> 1095 return self._combine(applied, shortcut=shortcut) File ~/Work/miniconda3/envs/20211123_py39/lib/python3.9/site-packages/xarray/core/groupby.py:1115, in DataArrayGroupByBase._combine(self, applied, shortcut) 1113 """Recombine the applied objects like the original.""" 1114 applied_example, applied = peek_at(applied) -> 1115 coord, dim, positions = self._infer_concat_args(applied_example) 1116 if shortcut: 1117 combined = self._concat_shortcut(applied, dim, positions) File ~/Work/miniconda3/envs/20211123_py39/lib/python3.9/site-packages/xarray/core/groupby.py:559, in GroupBy._infer_concat_args(self, applied_example) 558 def _infer_concat_args(self, applied_example): --> 559 if self._group_dim in applied_example.dims: 560 coord = self._group 561 positions = self._group_indices AttributeError: 'numpy.float64' object has no attribute 'dims' ``` Anything else we need to know?No response Environment
INSTALLED VERSIONS
------------------
commit: None
python: 3.9.13 | packaged by conda-forge | (main, May 27 2022, 16:56:21)
[GCC 10.3.0]
python-bits: 64
OS: Linux
OS-release: 4.4.0-210-generic
machine: x86_64
processor: x86_64
byteorder: little
LC_ALL: None
LANG: C
LOCALE: ('en_GB', 'UTF-8')
libhdf5: 1.12.2
libnetcdf: 4.8.1
xarray: 2022.6.0
pandas: 1.4.3
numpy: 1.23.2
scipy: 1.9.0
netCDF4: 1.6.0
pydap: installed
h5netcdf: None
h5py: 3.7.0
Nio: None
zarr: 2.12.0
cftime: 1.6.1
nc_time_axis: None
PseudoNetCDF: None
rasterio: None
cfgrib: None
iris: None
bottleneck: None
dask: 2022.6.1
distributed: 2022.6.1
matplotlib: 3.5.3
cartopy: 0.20.3
seaborn: None
numbagg: None
fsspec: 2022.7.1
cupy: None
pint: None
sparse: None
flox: None
numpy_groupies: None
setuptools: 65.2.0
pip: 22.2.2
conda: 4.14.0
pytest: 7.1.2
IPython: 8.4.0
sphinx: 5.1.1
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