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issues: 1188523721

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id node_id number title user state locked assignee milestone comments created_at updated_at closed_at author_association active_lock_reason draft pull_request body reactions performed_via_github_app state_reason repo type
1188523721 I_kwDOAMm_X85G127J 6431 Bug when padding coordinates with NaNs 35968931 open 0     2 2022-03-31T18:57:16Z 2023-03-30T13:33:10Z   MEMBER      

What happened?

python da = xr.DataArray(np.arange(9), dim='x') da.pad({'x': (0, 1)}, 'constant', constant_values=np.NAN) ```


ValueError Traceback (most recent call last) Input In [12], in <cell line: 1>() ----> 1 da.pad({'x': 1}, 'constant', constant_values=np.NAN)

File ~/Documents/Work/Code/xarray/xarray/core/dataarray.py:4158, in DataArray.pad(self, pad_width, mode, stat_length, constant_values, end_values, reflect_type, pad_width_kwargs) 4000 def pad( 4001 self, 4002 pad_width: Mapping[Any, int | tuple[int, int]] | None = None, (...) 4012 pad_width_kwargs: Any, 4013 ) -> DataArray: 4014 """Pad this array along one or more dimensions. 4015 4016 .. warning:: (...) 4156 z (x) float64 nan 100.0 200.0 nan 4157 """ -> 4158 ds = self._to_temp_dataset().pad( 4159 pad_width=pad_width, 4160 mode=mode, 4161 stat_length=stat_length, 4162 constant_values=constant_values, 4163 end_values=end_values, 4164 reflect_type=reflect_type, 4165 **pad_width_kwargs, 4166 ) 4167 return self._from_temp_dataset(ds)

File ~/Documents/Work/Code/xarray/xarray/core/dataset.py:7368, in Dataset.pad(self, pad_width, mode, stat_length, constant_values, end_values, reflect_type, pad_width_kwargs) 7366 variables[name] = var 7367 elif name in self.data_vars: -> 7368 variables[name] = var.pad( 7369 pad_width=var_pad_width, 7370 mode=mode, 7371 stat_length=stat_length, 7372 constant_values=constant_values, 7373 end_values=end_values, 7374 reflect_type=reflect_type, 7375 ) 7376 else: 7377 variables[name] = var.pad( 7378 pad_width=var_pad_width, 7379 mode=coord_pad_mode, 7380 coord_pad_options, # type: ignore[arg-type] 7381 )

File ~/Documents/Work/Code/xarray/xarray/core/variable.py:1360, in Variable.pad(self, pad_width, mode, stat_length, constant_values, end_values, reflect_type, pad_width_kwargs) 1357 if reflect_type is not None: 1358 pad_option_kwargs["reflect_type"] = reflect_type # type: ignore[assignment] -> 1360 array = np.pad( # type: ignore[call-overload] 1361 self.data.astype(dtype, copy=False), 1362 pad_width_by_index, 1363 mode=mode, 1364 pad_option_kwargs, 1365 ) 1367 return type(self)(self.dims, array)

File <array_function internals>:5, in pad(args, *kwargs)

File ~/miniconda3/envs/py39/lib/python3.9/site-packages/numpy/lib/arraypad.py:803, in pad(array, pad_width, mode, **kwargs) 801 for axis, width_pair, value_pair in zip(axes, pad_width, values): 802 roi = _view_roi(padded, original_area_slice, axis) --> 803 _set_pad_area(roi, axis, width_pair, value_pair) 805 elif mode == "empty": 806 pass # Do nothing as _pad_simple already returned the correct result

File ~/miniconda3/envs/py39/lib/python3.9/site-packages/numpy/lib/arraypad.py:147, in _set_pad_area(padded, axis, width_pair, value_pair) 130 """ 131 Set empty-padded area in given dimension. 132 (...) 144 broadcastable to the shape of arr. 145 """ 146 left_slice = _slice_at_axis(slice(None, width_pair[0]), axis) --> 147 padded[left_slice] = value_pair[0] 149 right_slice = _slice_at_axis( 150 slice(padded.shape[axis] - width_pair[1], None), axis) 151 padded[right_slice] = value_pair[1]

ValueError: cannot convert float NaN to integer ```

What did you expect to happen?

It should have successfully padded with a NaN, same as it does if you don't specify constant_values:

python In [14]: da.pad({'x': (0, 1)}, 'constant') Out[14]: <xarray.DataArray (x: 3)> array([ 0., 1., nan]) Dimensions without coordinates: x

Minimal Complete Verifiable Example

No response

Relevant log output

No response

Anything else we need to know?

No response

Environment

INSTALLED VERSIONS

commit: None python: 3.9.7 | packaged by conda-forge | (default, Sep 29 2021, 19:20:46) [GCC 9.4.0] python-bits: 64 OS: Linux OS-release: 5.11.0-7620-generic machine: x86_64 processor: x86_64 byteorder: little LC_ALL: None LANG: en_US.UTF-8 LOCALE: ('en_US', 'UTF-8') libhdf5: 1.12.1 libnetcdf: 4.8.1

xarray: 0.20.3.dev4+gdbc02d4e pandas: 1.4.0 numpy: 1.21.4 scipy: 1.7.3 netCDF4: 1.5.8 pydap: None h5netcdf: None h5py: None Nio: None zarr: 2.10.3 cftime: 1.5.1.1 nc_time_axis: None PseudoNetCDF: None rasterio: None cfgrib: None iris: None bottleneck: None dask: 2022.01.1 distributed: 2022.01.1 matplotlib: None cartopy: None seaborn: None numbagg: None fsspec: 2022.01.0 cupy: None pint: None sparse: None setuptools: 59.6.0 pip: 21.3.1 conda: 4.11.0 pytest: 6.2.5 IPython: 8.2.0 sphinx: 4.4.0

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