id,node_id,number,title,user,state,locked,assignee,milestone,comments,created_at,updated_at,closed_at,author_association,active_lock_reason,draft,pull_request,body,reactions,performed_via_github_app,state_reason,repo,type
955043280,MDU6SXNzdWU5NTUwNDMyODA=,5644,`polyfit` with weights alters the DataArray in place,8291800,closed,0,,,6,2021-07-28T16:43:17Z,2023-06-09T15:38:01Z,2023-06-09T15:38:01Z,CONTRIBUTOR,,,,"**What happened**:
After running `da.polyfit` on a DataArray with weights, the data has been overwritten
**What you expected to happen**:
I didn't see this documented anywhere, but I did not expect that creating a polyfit dataset would clobber the original data that I'm fitting to. The data isn't altered in the case of unweighted fitting, only weighted.
**Minimal Complete Verifiable Example**:
```python
In [2]: import xarray as xr; import numpy as np
In [3]: nz, ny, nx = (10, 20, 30)
In [4]: da = xr.DataArray(np.random.rand(nz, ny ,nz), dims=['z','y','x'])
In [6]: da.mean(), da.max()
Out[6]:
(<xarray.DataArray ()>
array(0.4963857),
<xarray.DataArray ()>
array(0.99996494))
In [7]: pf = da.polyfit(""z"", deg=2) # This will not alter the data
In [9]: da.mean(), da.max()
Out[9]:
(<xarray.DataArray ()>
array(0.4963857),
<xarray.DataArray ()>
array(0.99996494))
# Non-zero `w` argument alters the data
In [11]: pf = da.polyfit(""z"", deg=2, w=np.arange(nz))
In [12]: da.mean(), da.max()
Out[12]:
(<xarray.DataArray ()>
array(2.24317611),
<xarray.DataArray ()>
array(8.95963569))
```
**Anything else we need to know?**:
I assume it's happening here
https://github.com/pydata/xarray/blob/da99a5664df4f5013c2f6b0e758394bec5e0bc80/xarray/core/dataset.py#L6805
My question is whether this is supposed to be the case to avoid copies? Or if it's accidental?
**Environment**:
<details><summary>Output of <tt>xr.show_versions()</tt></summary>
<!-- Paste the output here xr.show_versions() here -->
xr.show_versions()
INSTALLED VERSIONS
------------------
commit: None
python: 3.8.6 | packaged by conda-forge | (default, Oct 7 2020, 18:42:56)
[Clang 10.0.1 ]
python-bits: 64
OS: Darwin
OS-release: 18.7.0
machine: x86_64
processor: i386
byteorder: little
LC_ALL: None
LANG: en_US.UTF-8
LOCALE: ('en_US', 'UTF-8')
libhdf5: 1.10.6
libnetcdf: 4.7.4
xarray: 0.19.0
pandas: 1.1.2
numpy: 1.20.2
scipy: 1.5.2
netCDF4: 1.5.4
pydap: None
h5netcdf: None
h5py: 3.2.1
Nio: None
zarr: 2.6.1
cftime: 1.2.1
nc_time_axis: None
PseudoNetCDF: None
rasterio: 1.2.1
cfgrib: None
iris: None
bottleneck: 1.3.2
dask: 2.14.0
distributed: 2.20.0
matplotlib: 3.3.0
cartopy: 0.18.0
seaborn: 0.10.1
numbagg: None
pint: 0.16.1
setuptools: 49.6.0.post20200814
pip: 21.1.2
conda: 4.8.4
pytest: 6.2.4
IPython: 7.18.1
sphinx: 3.5.1
</details>
","{""url"": ""https://api.github.com/repos/pydata/xarray/issues/5644/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,completed,13221727,issue
970619131,MDU6SXNzdWU5NzA2MTkxMzE=,5706,Loading datasets of numpy string arrays leads to error and/or segfault,8291800,closed,0,,,8,2021-08-13T18:17:33Z,2023-05-12T08:06:07Z,2023-05-12T08:06:06Z,CONTRIBUTOR,,,,"<!-- Please include a self-contained copy-pastable example that generates the issue if possible.
Please be concise with code posted. See guidelines below on how to provide a good bug report:
- Craft Minimal Bug Reports: http://matthewrocklin.com/blog/work/2018/02/28/minimal-bug-reports
- Minimal Complete Verifiable Examples: https://stackoverflow.com/help/mcve
Bug reports that follow these guidelines are easier to diagnose, and so are often handled much more quickly.
-->
**What happened**:
Numpy arrays of strings that are saved with h5py cause errors and segfaults, not always the same result.
**What you expected to happen**:
This works fine with `engine='h5netcdf'`:
```python
In [3]: ds = xr.load_dataset(""test_str_list.h5"", engine='h5netcdf', phony_dims='sort')
```
but will consistently have a segfault with `engine='netcdf4'`.
I'm assuming this is a netcdf backend issue, but thought I'd raise it here since xarray was how I discovered it.
**Minimal Complete Verifiable Example**:
```python
import h5py
import xarray as xr
with h5py.File(""test_str_list.h5"", ""w"") as hf:
hf[""pairs""] = np.array([[""20200101"", ""20200201""], [""20200101"", ""20200301""]]).astype(""S"")
ds = xr.load_dataset(""test_str_list.h5"")
*** Error in `/home/scott/miniconda3/envs/mapping/bin/python': munmap_chunk(): invalid pointer: 0x0000559c40956070 ***
======= Backtrace: =========
/lib64/libc.so.6(+0x7f7c4)[0x7f4a9a6bb7c4]
/home/scott/miniconda3/envs/mapping/lib/python3.8/site-packages/h5py/../../../libhdf5.so.103(H5MM_xfree+0xf)[0x7f4a7a93c3ef]
/home/scott/miniconda3/envs/mapping/lib/python3.8/site-packages/h5py/../../../libhdf5.so.103(H5C__untag_entry+0xc6)[0x7f4a7a854836]
/home/scott/miniconda3/envs/mapping/lib/python3.8/site-packages/h5py/../../../libhdf5.so.103(H5C__flush_single_entry+0x275)[0x7f4a7a846085]
/home/scott/miniconda3/envs/mapping/lib/python3.8/site-packages/h5py/../../../libhdf5.so.103(+0x80de3)[0x7f4a7a846de3]
... (few thousand line backtrace)
```
**Anything else we need to know?**:
Even stranger, it doesn't seem to be deterministic. After the crash, I tried the same load_dataset:
```python
In [2]: ds = xr.load_dataset(""test_str_list.h5"")
---------------------------------------------------------------------------
UnicodeDecodeError Traceback (most recent call last)
<ipython-input-2-475169bc9c75> in <module>
----> 1 ds = xr.load_dataset(""test_str_list.h5"")
~/miniconda3/envs/mapping/lib/python3.8/site-packages/xarray/backends/api.py in load_dataset(filename_or_obj, **kwargs)
242
243 with open_dataset(filename_or_obj, **kwargs) as ds:
--> 244 return ds.load()
245
246
~/miniconda3/envs/mapping/lib/python3.8/site-packages/xarray/core/dataset.py in load(self, **kwargs)
871 for k, v in self.variables.items():
872 if k not in lazy_data:
--> 873 v.load()
874
875 return self
~/miniconda3/envs/mapping/lib/python3.8/site-packages/xarray/core/variable.py in load(self, **kwargs)
449 self._data = as_compatible_data(self._data.compute(**kwargs))
450 elif not is_duck_array(self._data):
--> 451 self._data = np.asarray(self._data)
452 return self
453
~/miniconda3/envs/mapping/lib/python3.8/site-packages/numpy/core/_asarray.py in asarray(a, dtype, order)
81
82 """"""
---> 83 return array(a, dtype, copy=False, order=order)
84
85
~/miniconda3/envs/mapping/lib/python3.8/site-packages/xarray/core/indexing.py in __array__(self, dtype)
546
547 def __array__(self, dtype=None):
--> 548 self._ensure_cached()
549 return np.asarray(self.array, dtype=dtype)
550
~/miniconda3/envs/mapping/lib/python3.8/site-packages/xarray/core/indexing.py in _ensure_cached(self)
543 def _ensure_cached(self):
544 if not isinstance(self.array, NumpyIndexingAdapter):
--> 545 self.array = NumpyIndexingAdapter(np.asarray(self.array))
546
547 def __array__(self, dtype=None):
~/miniconda3/envs/mapping/lib/python3.8/site-packages/numpy/core/_asarray.py in asarray(a, dtype, order)
81
82 """"""
---> 83 return array(a, dtype, copy=False, order=order)
84
85
~/miniconda3/envs/mapping/lib/python3.8/site-packages/xarray/core/indexing.py in __array__(self, dtype)
516
517 def __array__(self, dtype=None):
--> 518 return np.asarray(self.array, dtype=dtype)
519
520 def __getitem__(self, key):
~/miniconda3/envs/mapping/lib/python3.8/site-packages/numpy/core/_asarray.py in asarray(a, dtype, order)
81
82 """"""
---> 83 return array(a, dtype, copy=False, order=order)
84
85
~/miniconda3/envs/mapping/lib/python3.8/site-packages/xarray/core/indexing.py in __array__(self, dtype)
417 def __array__(self, dtype=None):
418 array = as_indexable(self.array)
--> 419 return np.asarray(array[self.key], dtype=None)
420
421 def transpose(self, order):
~/miniconda3/envs/mapping/lib/python3.8/site-packages/xarray/backends/netCDF4_.py in __getitem__(self, key)
89
90 def __getitem__(self, key):
---> 91 return indexing.explicit_indexing_adapter(
92 key, self.shape, indexing.IndexingSupport.OUTER, self._getitem
93 )
~/miniconda3/envs/mapping/lib/python3.8/site-packages/xarray/core/indexing.py in explicit_indexing_adapter(key, shape, indexing_support, raw_indexing_method)
708 """"""
709 raw_key, numpy_indices = decompose_indexer(key, shape, indexing_support)
--> 710 result = raw_indexing_method(raw_key.tuple)
711 if numpy_indices.tuple:
712 # index the loaded np.ndarray
~/miniconda3/envs/mapping/lib/python3.8/site-packages/xarray/backends/netCDF4_.py in _getitem(self, key)
102 with self.datastore.lock:
103 original_array = self.get_array(needs_lock=False)
--> 104 array = getitem(original_array, key)
105 except IndexError:
106 # Catch IndexError in netCDF4 and return a more informative
netCDF4/_netCDF4.pyx in netCDF4._netCDF4.Variable.__getitem__()
netCDF4/_netCDF4.pyx in netCDF4._netCDF4.Variable._get()
UnicodeDecodeError: 'utf-8' codec can't decode byte 0xd8 in position 0: invalid continuation byte
```
But then immediately after, another segault
```python
In [4]: ds = xr.load_dataset(""test_str_list.h5"", engine='netcdf4')
*** Error in `/home/scott/miniconda3/envs/mapping/bin/python': corrupted size vs. prev_size: 0x000055f97e7194a0 ***
======= Backtrace: =========
```
<details><summary>Beginning of segfault stack trace, but goes on</summary>
```
======= Backtrace: =========
/lib64/libc.so.6(+0x7f7c4)[0x7f1ba11a87c4]
/lib64/libc.so.6(+0x818bb)[0x7f1ba11aa8bb]
/home/scott/miniconda3/envs/mapping/lib/python3.8/site-packages/h5py/../../../libhdf5.so.103(H5MM_xfree+0xf)[0x7f1b8142d3ef]
/home/scott/miniconda3/envs/mapping/lib/python3.8/site-packages/h5py/../../../libhdf5.so.103(H5S_close+0x84)[0x7f1b814a69a4]
/home/scott/miniconda3/envs/mapping/lib/python3.8/site-packages/h5py/../../../libhdf5.so.103(H5I_dec_ref+0x77)[0x7f1b8141a407]
/home/scott/miniconda3/envs/mapping/lib/python3.8/site-packages/h5py/../../../libhdf5.so.103(H5I_dec_app_ref+0x29)[0x7f1b8141a4d9]
/home/scott/miniconda3/envs/mapping/lib/python3.8/site-packages/h5py/../../../libhdf5.so.103(H5Sclose+0x73)[0x7f1b814a7023]
/home/scott/miniconda3/envs/mapping/lib/python3.8/site-packages/rasterio/../../.././libnetcdf.so.18(NC4_get_vars+0x5ad)[0x7f1b7bbc46ad]
/home/scott/miniconda3/envs/mapping/lib/python3.8/site-packages/rasterio/../../.././libnetcdf.so.18(NC4_get_vara+0x12)[0x7f1b7bbc4e62]
/home/scott/miniconda3/envs/mapping/lib/python3.8/site-packages/rasterio/../../.././libnetcdf.so.18(NC_get_vara+0x6f)[0x7f1b7bb6b5df]
/home/scott/miniconda3/envs/mapping/lib/python3.8/site-packages/rasterio/../../.././libnetcdf.so.18(nc_get_vara+0x8b)[0x7f1b7bb6c35b]
/home/scott/miniconda3/envs/mapping/lib/python3.8/site-packages/netCDF4/_netCDF4.cpython-38-x86_64-linux-gnu.so(+0xccf21)[0x7f1b4d0daf21]
/home/scott/miniconda3/envs/mapping/bin/python(+0x13a77e)[0x55f97aeca77e]
/home/scott/miniconda3/envs/mapping/lib/python3.8/site-packages/netCDF4/_netCDF4.cpython-38-x86_64-linux-gnu.so(+0x224fd)[0x7f1b4d0304fd]
/home/scott/miniconda3/envs/mapping/lib/python3.8/site-packages/netCDF4/_netCDF4.cpython-38-x86_64-linux-gnu.so(+0x559d9)[0x7f1b4d0639d9]
/home/scott/miniconda3/envs/mapping/bin/python(PyObject_GetItem+0x48)[0x55f97af10aa8]
/home/scott/miniconda3/envs/mapping/bin/python(+0x139acd)[0x55f97aec9acd]
```
</details>
**Environment**:
<details><summary>Output of <tt>xr.show_versions()</tt></summary>
<!-- Paste the output here xr.show_versions() here -->
In [1]: xr.show_versions()
INSTALLED VERSIONS
------------------
commit: None
python: 3.8.5 | packaged by conda-forge | (default, Aug 29 2020, 01:22:49)
[GCC 7.5.0]
python-bits: 64
OS: Linux
OS-release: 3.10.0-1062.4.1.el7.x86_64
machine: x86_64
processor: x86_64
byteorder: little
LC_ALL: None
LANG: en_US.UTF-8
LOCALE: ('en_US', 'UTF-8')
libhdf5: 1.10.6
libnetcdf: 4.7.4
xarray: 0.19.0
pandas: 1.1.0
numpy: 1.19.2
scipy: 1.5.3
netCDF4: 1.5.4
pydap: None
h5netcdf: 0.11.0
h5py: 3.2.1
Nio: None
zarr: 2.8.3
cftime: 1.2.1
nc_time_axis: None
PseudoNetCDF: None
rasterio: 1.1.5
cfgrib: 0.9.8.5
iris: None
bottleneck: 1.3.2
dask: 2021.01.0
distributed: 2.20.0
matplotlib: 3.3.1
cartopy: 0.17.0
seaborn: None
numbagg: None
pint: 0.17
setuptools: 50.3.2
pip: 21.1.3
conda: 4.8.4
pytest: None
IPython: 7.18.1
sphinx: 4.0.2
</details>
","{""url"": ""https://api.github.com/repos/pydata/xarray/issues/5706/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,completed,13221727,issue
1056881922,I_kwDOAMm_X84-_r0C,6000,Parallel access to DataArray within `with` statement causes `BlockingIOError`,8291800,open,0,,,2,2021-11-18T03:06:26Z,2022-01-13T03:08:02Z,,CONTRIBUTOR,,,,"<!-- Please include a self-contained copy-pastable example that generates the issue if possible.
Please be concise with code posted. See guidelines below on how to provide a good bug report:
- Craft Minimal Bug Reports: http://matthewrocklin.com/blog/work/2018/02/28/minimal-bug-reports
- Minimal Complete Verifiable Examples: https://stackoverflow.com/help/mcve
Bug reports that follow these guidelines are easier to diagnose, and so are often handled much more quickly.
-->
**What happened**:
My general usage is
1. Read one DataArray from an existing dataset within a `with` statement, so the file closes at the end
2. Run it through some functions, sometimes in parallel
3. after closing the dataset, append to the dataset in a new DataArray with `.to_netcdf(existing_file, engine=""h5netcdf"")`.
With the setup below, I get
`BlockingIOError: [Errno 11] Unable to create file (unable to lock file, errno = 11, error message = 'Resource temporarily unavailable')`
It's entirely possible (and likely) that it's an issue with some other library that I'm using/that xarray is using... but I thought I someone might have an idea why a very similar versions of the same script succeeds, while the first one fails.
**What you expected to happen**:
No error, which happens for the 2nd version
**Minimal Complete Verifiable Example**:
For this version, I'm using [pymp](https://github.com/classner/pymp), which I'd rather not include in the MCVE, but i've had similar issues jsut using the python multiprocessing. I just wanted to post this one first.
```python
import xarray as xr
import numpy as np
import pymp
def dummy_function_parallel(stack):
out = np.zeros(stack.shape, dtype=np.float32)
# Also fails:
# out = pymp.shared.array(stack.shape, dtype=np.float32)
with pymp.Parallel(4) as p:
for i in p.range(3):
out[:, i] = stack[:, i] * 3
return out
# Example of a fucntion that *doesn't* cause a failure ever
def dummy_function2(stack):
return 2 * stack
if __name__ == ""__main__"":
x, y, z = np.arange(3), np.arange(3), np.arange(3)
data = np.random.rand(3, 3, 3)
da = xr.DataArray(data, dims=[""z"", ""y"", ""x""], coords={""x"": x, ""y"": y, ""z"": z})
da.to_dataset(name=""testdata"").to_netcdf(""testdata.nc"", engine=""h5netcdf"")
with xr.open_dataset(""testdata.nc"") as ds:
da = ds[""testdata""]
newstack = dummy_function_parallel(da.values)
# This function does work without the parallel stuff
# newstack = dummy_function2(da.values)
da_new = xr.DataArray(newstack, coords=da.coords, dims=da.dims)
da_new.to_dataset(name=""new_testdata"").to_netcdf(""testdata.nc"", engine=""h5netcdf"")
```
Running this causes the following traceback
```python-traceback
Traceback (most recent call last):
File ""/home/scott/miniconda3/envs/mapping/lib/python3.8/site-packages/xarray/backends/file_manager.py"", line 199, in _acquire_with_cache_info
file = self._cache[self._key]
File ""/home/scott/miniconda3/envs/mapping/lib/python3.8/site-packages/xarray/backends/lru_cache.py"", line 53, in __getitem__
value = self._cache[key]
KeyError: [<class 'h5netcdf.core.File'>, ('/data4/scott/path85/stitched/top_strip/igrams/testdata.nc',), 'a', (('decode_vlen_strings', True), ('invalid_netcdf', None))]
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File ""/home/scott/repos/insar/insar/testxr.py"", line 46, in <module>
da_new.to_dataset(name=""new_testdata"").to_netcdf(""testdata.nc"", engine=""h5netcdf"")
File ""/home/scott/miniconda3/envs/mapping/lib/python3.8/site-packages/xarray/core/dataset.py"", line 1900, in to_netcdf
return to_netcdf(
File ""/home/scott/miniconda3/envs/mapping/lib/python3.8/site-packages/xarray/backends/api.py"", line 1060, in to_netcdf
store = store_open(target, mode, format, group, **kwargs)
File ""/home/scott/miniconda3/envs/mapping/lib/python3.8/site-packages/xarray/backends/h5netcdf_.py"", line 178, in open
return cls(manager, group=group, mode=mode, lock=lock, autoclose=autoclose)
File ""/home/scott/miniconda3/envs/mapping/lib/python3.8/site-packages/xarray/backends/h5netcdf_.py"", line 123, in __init__
self._filename = find_root_and_group(self.ds)[0].filename
File ""/home/scott/miniconda3/envs/mapping/lib/python3.8/site-packages/xarray/backends/h5netcdf_.py"", line 189, in ds
return self._acquire()
File ""/home/scott/miniconda3/envs/mapping/lib/python3.8/site-packages/xarray/backends/h5netcdf_.py"", line 181, in _acquire
with self._manager.acquire_context(needs_lock) as root:
File ""/home/scott/miniconda3/envs/mapping/lib/python3.8/contextlib.py"", line 113, in __enter__
return next(self.gen)
File ""/home/scott/miniconda3/envs/mapping/lib/python3.8/site-packages/xarray/backends/file_manager.py"", line 187, in acquire_context
file, cached = self._acquire_with_cache_info(needs_lock)
File ""/home/scott/miniconda3/envs/mapping/lib/python3.8/site-packages/xarray/backends/file_manager.py"", line 205, in _acquire_with_cache_info
file = self._opener(*self._args, **kwargs)
File ""/home/scott/miniconda3/envs/mapping/lib/python3.8/site-packages/h5netcdf/core.py"", line 712, in __init__
self._h5file = h5py.File(path, mode, **kwargs)
File ""/home/scott/miniconda3/envs/mapping/lib/python3.8/site-packages/h5py/_hl/files.py"", line 442, in __init__
fid = make_fid(name, mode, userblock_size,
File ""/home/scott/miniconda3/envs/mapping/lib/python3.8/site-packages/h5py/_hl/files.py"", line 201, in make_fid
fid = h5f.create(name, h5f.ACC_TRUNC, fapl=fapl, fcpl=fcpl)
File ""h5py/_objects.pyx"", line 54, in h5py._objects.with_phil.wrapper
File ""h5py/_objects.pyx"", line 55, in h5py._objects.with_phil.wrapper
File ""h5py/h5f.pyx"", line 116, in h5py.h5f.create
BlockingIOError: [Errno 11] Unable to create file (unable to lock file, errno = 11, error message = 'Resource temporarily unavailable')
```
**Anything else we need to know?**:
The weird part to me: If I change the end of the script so that the function runs **after** the `with` statement exits (so I'm passing the DataArray reference from a closed dataset), there's never an error. Indeed, that's how I fixed this for my real, longer script.
```python
with xr.open_dataset(""testdata.nc"") as ds:
da = ds[""testdata""]
# Now after it closed, this parallel function doesn't cause the hangup
newstack = dummy_function_parallel(da.values)
da_new = xr.DataArray(newstack, coords=da.coords, dims=da.dims)
da_new.to_dataset(name=""new_testdata"").to_netcdf(""testdata.nc"", engine=""h5netcdf"")
```
**Environment**:
<details><summary>Output of <tt>xr.show_versions()</tt></summary>
<!-- Paste the output here xr.show_versions() here -->
INSTALLED VERSIONS
------------------
commit: None
python: 3.8.5 (default, Sep 4 2020, 07:30:14)
[GCC 7.3.0]
python-bits: 64
OS: Linux
OS-release: 3.10.0-1062.4.1.el7.x86_64
machine: x86_64
processor: x86_64
byteorder: little
LC_ALL: None
LANG: en_US.UTF-8
LOCALE: ('en_US', 'UTF-8')
libhdf5: 1.10.6
libnetcdf: 4.7.4
xarray: 0.19.0
pandas: 1.1.0
numpy: 1.19.2
scipy: 1.5.3
netCDF4: 1.5.4
pydap: None
h5netcdf: 0.11.0
h5py: 3.2.1
Nio: None
zarr: 2.8.3
cftime: 1.2.1
nc_time_axis: None
PseudoNetCDF: None
rasterio: 1.2.6
cfgrib: 0.9.8.5
iris: None
bottleneck: 1.3.2
dask: 2021.01.0
distributed: 2.20.0
matplotlib: 3.3.1
cartopy: 0.19.0.post1
seaborn: None
numbagg: None
pint: 0.17
setuptools: 50.3.2
pip: 21.2.4
conda: 4.8.4
pytest: 6.2.4
IPython: 7.18.1
sphinx: 4.0.2
</details>
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978549056,MDExOlB1bGxSZXF1ZXN0NzE5MTE5MzUz,5736,remove deprecated xshape from ecosystem documentation,8291800,closed,0,,,1,2021-08-24T23:02:39Z,2021-08-28T03:28:08Z,2021-08-28T03:01:44Z,CONTRIBUTOR,,0,pydata/xarray/pulls/5736,"Updating documentation to remove https://github.com/ClimateImpactLab/xshape , which says ""deprecated. Use geopandas"".
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