id,node_id,number,title,user,state,locked,assignee,milestone,comments,created_at,updated_at,closed_at,author_association,active_lock_reason,draft,pull_request,body,reactions,performed_via_github_app,state_reason,repo,type 1959816045,I_kwDOAMm_X8500Gtt,8368,"to_netcdf: Unexpected drop of ""units"" attribute of attached ""bounds""",15173535,open,0,,,4,2023-10-24T18:15:05Z,2024-04-09T11:11:20Z,,NONE,,,,"### What happened? When writing a Dataset to netcdf, any DataArrays that are linked as bounds through another variables attrs['bounds'] entry, have their (specifically) 'units' attribute dropped inside the written netcdf file. See example ### What did you expect to happen? Units attribute to be written to the netcdf file. ### Minimal Complete Verifiable Example ```Python import numpy as np import xarray as xr # Create a new Dataset ds = xr.Dataset() # Add the x variable, Specify 'x_bnds' as bounds, defined later. ds['x'] = xr.DataArray(np.arange(10), dims='x', attrs={'units':'m', 'bounds':'x_bnds'}) # Bounds require an extra dimension equal to number of vertices. ds['nv'] = xr.DataArray(np.r_[0, 1], dims='nv') # Add the actual bounding values for variable x. ds['x_bnds'] = xr.DataArray(np.squeeze(np.dstack([np.arange(10)-0.5, np.arange(10)+0.5])), dims=['x', 'nv'], attrs={'test':4, 'units':'m', }) print('Units is attached to the bounds in the dataset before writing', 'units' in ds['x_bnds'].attrs) # Write to netcdf file ds.to_netcdf('tmp.nc', format='netcdf4', engine='netcdf4') # Open the dataset and check x_bnds attrs. units is dropped. new = xr.open_dataset('tmp.nc') print(new['x_bnds'].attrs) # Confirm that units were never written to the file. !h5dump -d /x_bnds tmp.nc ``` ### MVCE confirmation - [X] Minimal example — the example is as focused as reasonably possible to demonstrate the underlying issue in xarray. - [X] Complete example — the example is self-contained, including all data and the text of any traceback. - [X] Verifiable example — the example copy & pastes into an IPython prompt or [Binder notebook](https://mybinder.org/v2/gh/pydata/xarray/main?urlpath=lab/tree/doc/examples/blank_template.ipynb), returning the result. - [X] New issue — a search of GitHub Issues suggests this is not a duplicate. - [X] Recent environment — the issue occurs with the latest version of xarray and its dependencies. ### Relevant log output _No response_ ### Anything else we need to know? _No response_ ### Environment
INSTALLED VERSIONS ------------------ commit: None python: 3.11.5 (main, Sep 11 2023, 08:19:27) [Clang 14.0.6 ] python-bits: 64 OS: Darwin OS-release: 21.6.0 machine: x86_64 processor: i386 byteorder: little LC_ALL: None LANG: en_US.UTF-8 LOCALE: ('en_US', 'UTF-8') libhdf5: 1.12.2 libnetcdf: 4.9.3-development xarray: 2023.10.1 pandas: 2.1.1 numpy: 1.26.1 scipy: 1.11.3 netCDF4: 1.6.4 pydap: None h5netcdf: None h5py: 3.10.0 Nio: None zarr: None cftime: 1.6.3 nc_time_axis: None PseudoNetCDF: None iris: None bottleneck: None dask: None distributed: None matplotlib: 3.8.0 cartopy: None seaborn: None numbagg: None fsspec: None cupy: None pint: None sparse: None flox: None numpy_groupies: None setuptools: 68.0.0 pip: 23.3 conda: None pytest: None mypy: None IPython: 8.16.1 sphinx: 7.2.6
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