id,node_id,number,title,user,state,locked,assignee,milestone,comments,created_at,updated_at,closed_at,author_association,active_lock_reason,draft,pull_request,body,reactions,performed_via_github_app,state_reason,repo,type 528154893,MDU6SXNzdWU1MjgxNTQ4OTM=,3572,Context manager `AttributeError` when engine='h5netcdf',500246,closed,0,,,2,2019-11-25T15:19:29Z,2019-11-25T16:12:37Z,2019-11-25T16:12:37Z,CONTRIBUTOR,,,,"Opening this NetCDF file works fine with the default engine, but fails with AttributeError with the h5netcdf engine: #### MCVE Code Sample Data available from EUMETSAT: https://www.eumetsat.int/website/home/Satellites/FutureSatellites/MeteosatThirdGeneration/MTGData/MTGUserTestData/index.html --> ftp://ftp.eumetsat.int/pub/OPS/out/test-data/Test-data-for-External-Users/MTG_FCI_Test-Data/ --> uncompressed ```python import xarray f = ""/path/to/.../W_XX-EUMETSAT-Darmstadt,IMG+SAT,MTI1+FCI-1C-RRAD-FDHSI-FD--CHK-BODY--L2P-NC4E_C_EUMT_20170410114434_GTT_DEV_20170410113925_20170410113934_N__C_0070_0067.nc"" ds = xarray.open_dataset(f, engine=""h5netcdf"") ``` #### Expected Output No output at all. #### Problem Description Results in `AttributeError`: ``` Traceback (most recent call last): File ""mwe4.py"", line 3, in with xarray.open_dataset(f, engine=""h5netcdf"") as ds: File ""/media/nas/x21324/miniconda3/envs/py37e/lib/python3.7/site-packages/xarray/backends/api.py"", line 535, in open_dataset ds = maybe_decode_store(store) File ""/media/nas/x21324/miniconda3/envs/py37e/lib/python3.7/site-packages/xarray/backends/api.py"", line 450, in maybe_decode_store use_cftime=use_cftime, File ""/media/nas/x21324/miniconda3/envs/py37e/lib/python3.7/site-packages/xarray/conventions.py"", line 570, in decode_cf vars, attrs = obj.load() File ""/media/nas/x21324/miniconda3/envs/py37e/lib/python3.7/site-packages/xarray/backends/common.py"", line 123, in load (_decode_variable_name(k), v) for k, v in self.get_variables().items() File ""/media/nas/x21324/miniconda3/envs/py37e/lib/python3.7/site-packages/xarray/backends/h5netcdf_.py"", line 156, in get_variables (k, self.open_store_variable(k, v)) for k, v in self.ds.variables.items() File ""/media/nas/x21324/miniconda3/envs/py37e/lib/python3.7/site-packages/xarray/core/utils.py"", line 402, in FrozenDict return Frozen(dict(*args, **kwargs)) File ""/media/nas/x21324/miniconda3/envs/py37e/lib/python3.7/site-packages/xarray/backends/h5netcdf_.py"", line 156, in (k, self.open_store_variable(k, v)) for k, v in self.ds.variables.items() File ""/media/nas/x21324/miniconda3/envs/py37e/lib/python3.7/site-packages/xarray/backends/h5netcdf_.py"", line 120, in open_store_variable dimensions = var.dimensions File ""/media/nas/x21324/miniconda3/envs/py37e/lib/python3.7/site-packages/h5netcdf/core.py"", line 114, in dimensions self._dimensions = self._lookup_dimensions() File ""/media/nas/x21324/miniconda3/envs/py37e/lib/python3.7/site-packages/h5netcdf/core.py"", line 98, in _lookup_dimensions for axis, dim in enumerate(self._h5ds.dims): AttributeError: 'Datatype' object has no attribute 'dims' ``` #### Output of ``xr.show_versions()``
INSTALLED VERSIONS ------------------ commit: None python: 3.7.3 | packaged by conda-forge | (default, Jul 1 2019, 21:52:21) [GCC 7.3.0] python-bits: 64 OS: Linux OS-release: 4.12.14-lp150.12.79-default machine: x86_64 processor: x86_64 byteorder: little LC_ALL: None LANG: en_GB.UTF-8 LOCALE: en_GB.UTF-8 libhdf5: 1.10.5 libnetcdf: 4.7.1 xarray: 0.14.1 pandas: 0.25.3 numpy: 1.17.3 scipy: 1.3.2 netCDF4: 1.5.3 pydap: None h5netcdf: 0.7.4 h5py: 2.10.0 Nio: None zarr: 2.3.2 cftime: 1.0.4.2 nc_time_axis: None PseudoNetCDF: None rasterio: 1.1.0 cfgrib: None iris: None bottleneck: None dask: 2.8.0 distributed: 2.8.0 matplotlib: 3.1.2 cartopy: 0.17.0 seaborn: None numbagg: None setuptools: 41.6.0.post20191101 pip: 19.3.1 conda: None pytest: 5.3.0 IPython: 7.9.0 sphinx: 2.2.1
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