id,node_id,number,title,user,state,locked,assignee,milestone,comments,created_at,updated_at,closed_at,author_association,active_lock_reason,draft,pull_request,body,reactions,performed_via_github_app,state_reason,repo,type 490037439,MDU6SXNzdWU0OTAwMzc0Mzk=,3282,Silent value assignment failure in open_zarr Dataset due to hidden mode='r',6475152,open,0,,,0,2019-09-05T22:23:46Z,2020-03-29T10:33:20Z,,NONE,,,,"Hello Xarray devs, Thanks for your work on this fantastic package. I'm a new user, and the subtleties of different data stores are unfamiliar to me. I got tripped up by the fact that Zarr stores are (silently) read-only, and I think it would be helpful if this were more prominent in the docstring or [zarr section](https://xarray.pydata.org/en/stable/io.html#zarr) of the docs. When I try to assign values to parts of a local Zarr-backed Dataset, I get a silent failure: ```python In [142]: ds = xr.open_zarr('tmp.zarr', chunks=None) In [143]: selector = dict(time='2014-06-06T01:00:00', azimuth=0, frequency=0.0) In [144]: ds['counts'].loc[selector].values Out[144]: array(4294967295, dtype=uint32) # try to assign a value here, like the example in the docs: # In [55]: ds['empty'].loc[dict(lon=260, lat=30)] = 100 In [145]: ds['counts'].loc[selector].values = 0 # just get the same value back In [146]: ds['counts'].loc[selector].values Out[146]: array(4294967295, dtype=uint32) ``` The answer seems to be buried in the `open_zarr` source code: ```python ... # Zarr supports a wide range of access modes, but for now xarray either # reads or writes from a store, never both. For open_zarr, we only read mode = 'r' zarr_store = ZarrStore.open_group(store, mode=mode, synchronizer=synchronizer, group=group, consolidated=consolidated) ... ``` #### Expected Output Assignment that follows the examples [in the documentation](https://xarray.pydata.org/en/stable/indexing.html#assigning-values-with-indexing). 1. I think that mentioning `mode='r'` in the `open_zarr` docstring would be the most helpful. 2. A description of this and the reasoning behind why zarr datasets are read-only would be helpful in the [zarr section](https://xarray.pydata.org/en/stable/io.html#zarr) of the docs. 3. Optionally, a note in the [indexing and assignment](https://xarray.pydata.org/en/stable/indexing.html#assigning-values-with-indexing) that not all store backends support assignment would also be helpful. I'm happy to make a PR on 1 & 3, but I'm not familiar with the reasoning behind why stores are never mixed-mode. Thanks again! #### Output of ``xr.show_versions()``
INSTALLED VERSIONS ------------------ commit: None python: 3.7.3 | packaged by conda-forge | (default, Mar 27 2019, 15:43:19) [Clang 4.0.1 (tags/RELEASE_401/final)] python-bits: 64 OS: Darwin OS-release: 16.7.0 machine: x86_64 processor: i386 byteorder: little LC_ALL: None LANG: en_US.UTF-8 LOCALE: en_US.UTF-8 libhdf5: None libnetcdf: None xarray: 0.12.3 pandas: 0.24.2 numpy: 1.16.3 scipy: 1.3.0 netCDF4: None pydap: None h5netcdf: None h5py: None Nio: None zarr: 2.3.1 cftime: None nc_time_axis: None PseudoNetCDF: None rasterio: None cfgrib: None iris: None bottleneck: None dask: 1.2.2 distributed: 1.28.1 matplotlib: 3.1.0 cartopy: None seaborn: None numbagg: None setuptools: 41.0.1 pip: 19.1 conda: None pytest: None IPython: 7.5.0 sphinx: None
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