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issue 5

  • xarray to and from iris 4
  • Plotting on map projection much slower on v0.6.1 than 0.6.0 2
  • xarray to and from Iris 1
  • holoviews / bokeh doesn't like cftime coords 1
  • Build timeouts on ReadTheDocs 1

user 1

  • pelson · 9 ✖

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  • NONE 9
id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
407678876 https://github.com/pydata/xarray/issues/2209#issuecomment-407678876 https://api.github.com/repos/pydata/xarray/issues/2209 MDEyOklzc3VlQ29tbWVudDQwNzY3ODg3Ng== pelson 810663 2018-07-25T08:37:53Z 2018-07-25T08:37:53Z NONE

Pinging @pelson who have some ideas in mind on how to address this problem.

The ideas relate to the fetching of the index, which will take orders of magnitude less time than the resolve and download stages in conda. They aren't entirely unrelated though, as a smaller index (the proposal) would result in fewer options for the conda solver to have to work through. No matter what we do, caching the binaries will have the same impact, though it is a challenge to cache sensibly without having a really large cache... You may find that caching an environment.yaml actually has more of an impact than caching the binaries themselves (i.e. this means you continue to download the binaries each time, but don't do a conda resolve each time).

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  Build timeouts on ReadTheDocs 328572578
404830736 https://github.com/pydata/xarray/issues/2164#issuecomment-404830736 https://api.github.com/repos/pydata/xarray/issues/2164 MDEyOklzc3VlQ29tbWVudDQwNDgzMDczNg== pelson 810663 2018-07-13T13:17:44Z 2018-07-13T13:17:44Z NONE

This could probably either be done in a separate package

Why a separate package and not in nc-time-axis? (Or alternatively, just in cftime, as you say)

FWIW https://github.com/SciTools/nc-time-axis/issues/16 tried to get the ball rolling on clarifications around the CalendarDateTime object. That was necessary in the days when there was a single PhoneyDateTime object, that didn't have calendar information associated with it. It seems that some refactoring is very plausible in nc-time-axis at this point.

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  holoviews / bokeh doesn't like cftime coords 324740017
354980754 https://github.com/pydata/xarray/pull/814#issuecomment-354980754 https://api.github.com/repos/pydata/xarray/issues/814 MDEyOklzc3VlQ29tbWVudDM1NDk4MDc1NA== pelson 810663 2018-01-03T10:33:21Z 2018-01-03T10:33:21Z NONE

Closed by #1750?

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  xarray to and from iris 145140657
354977934 https://github.com/pydata/xarray/pull/1750#issuecomment-354977934 https://api.github.com/repos/pydata/xarray/issues/1750 MDEyOklzc3VlQ29tbWVudDM1NDk3NzkzNA== pelson 810663 2018-01-03T10:19:16Z 2018-01-03T10:19:16Z NONE

Apologies for the delay. This is a great first pass. Definitely more metadata sharing possible, but I'm glad this has been merged - let's grow the capability as required. If any issues crop up, please feel free to ping me & @bjlittle. 👍

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  xarray to and from Iris 278286073
262359050 https://github.com/pydata/xarray/pull/814#issuecomment-262359050 https://api.github.com/repos/pydata/xarray/issues/814 MDEyOklzc3VlQ29tbWVudDI2MjM1OTA1MA== pelson 810663 2016-11-22T20:39:23Z 2016-11-22T20:39:23Z NONE

This is looking pretty comprehensive to me. Could maybe do with a couple of tests perhaps, but otherwise 👍 .

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  xarray to and from iris 145140657
228703831 https://github.com/pydata/xarray/pull/814#issuecomment-228703831 https://api.github.com/repos/pydata/xarray/issues/814 MDEyOklzc3VlQ29tbWVudDIyODcwMzgzMQ== pelson 810663 2016-06-27T10:00:54Z 2016-06-27T10:00:54Z NONE

@pelson @rhattersley any tips on handling the edge cases of cubes with some, but not all missing dim_coords?

I might consider something like (untested):

for dim in xrange(cube.ndim): try: dim_coord = cube.coord(dim_coords=True, dimensions=(dim,)) except iris.exceptions.CoordinateNotFoundError: index_coord = range(cube.shape[dim])

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  xarray to and from iris 145140657
204692732 https://github.com/pydata/xarray/pull/814#issuecomment-204692732 https://api.github.com/repos/pydata/xarray/issues/814 MDEyOklzc3VlQ29tbWVudDIwNDY5MjczMg== pelson 810663 2016-04-02T10:40:59Z 2016-04-02T10:40:59Z NONE

Thanks for pinging @shoyer. I'll also ping @rhattersley, and one of us will take a good look in the next few days. :+1:

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  xarray to and from iris 145140657
157616130 https://github.com/pydata/xarray/issues/657#issuecomment-157616130 https://api.github.com/repos/pydata/xarray/issues/657 MDEyOklzc3VlQ29tbWVudDE1NzYxNjEzMA== pelson 810663 2015-11-18T06:25:27Z 2015-11-18T06:25:27Z NONE

Thanks @fmaussion - I've raised it in https://github.com/SciTools/cartopy/issues/700. Thanks for putting together the self contained example - it's fine to have xray as a dependency on that. FWIW you would do something like plt.pcolormesh(lons, lats, l1 + l2, transform=ccrs.PlateCarree()) if you didn't have a DataArray.

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  Plotting on map projection much slower on v0.6.1 than 0.6.0 117002929
157008004 https://github.com/pydata/xarray/issues/657#issuecomment-157008004 https://api.github.com/repos/pydata/xarray/issues/657 MDEyOklzc3VlQ29tbWVudDE1NzAwODAwNA== pelson 810663 2015-11-16T11:56:46Z 2015-11-16T11:56:46Z NONE

There is definitely scope for being smarter with cartopy's pcolormesh. There isn't an issue for it yet, but would be happy if you opened up a performance related issue in cartopy. pcolormesh will always be slower than imshow, but in most cases, not an order of magnitude slower!

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  Plotting on map projection much slower on v0.6.1 than 0.6.0 117002929

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