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  • lkilcher · 1 ✖

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id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
1035593183 https://github.com/pydata/xarray/issues/2186#issuecomment-1035593183 https://api.github.com/repos/pydata/xarray/issues/2186 IC_kwDOAMm_X849ueXf lkilcher 2273361 2022-02-10T22:24:37Z 2022-02-10T22:24:37Z NONE

Hey folks, I ran into a similar memory leak issue. In my case a had the following:

for num in range(100):
    ds = xr.open_dataset('data.{}.nc'.format(num)) # This data was compressed with zlib, not sure if that matters

    # do some stuff, but NOT assigning any data in ds to new variables

    del ds

For some reason (maybe having to do with the # do some stuff), ds wasn't actually getting cleared. I was able to fix the problem by manually triggering garbage collection (import gc, and gc.collect() after the del ds statement). Perhaps this will help others who end up here...

 
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   Memory leak while looping through a Dataset 326533369

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