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  • ValueError: unrecognized engine zarr must be one of: ['netcdf4', 'scipy', 'store'] · 6 ✖
id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
988215531 https://github.com/pydata/xarray/issues/5395#issuecomment-988215531 https://api.github.com/repos/pydata/xarray/issues/5395 IC_kwDOAMm_X8465vjr ryanjdillon 916762 2021-12-07T19:44:04Z 2021-12-07T19:44:04Z NONE

zarr and other formats can be installed with only xarray[io] if you don't need all the other bits.

http://xarray.pydata.org/en/stable/getting-started-guide/installing.html#instructions

 
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   ValueError: unrecognized engine zarr must be one of: ['netcdf4', 'scipy', 'store'] 905452377
850486324 https://github.com/pydata/xarray/issues/5395#issuecomment-850486324 https://api.github.com/repos/pydata/xarray/issues/5395 MDEyOklzc3VlQ29tbWVudDg1MDQ4NjMyNA== iuryt 5797727 2021-05-28T15:09:30Z 2021-05-28T15:09:30Z NONE

actually, did you try !pip install xarray[complete]?

That worked! Thanks!

 
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   ValueError: unrecognized engine zarr must be one of: ['netcdf4', 'scipy', 'store'] 905452377
850483726 https://github.com/pydata/xarray/issues/5395#issuecomment-850483726 https://api.github.com/repos/pydata/xarray/issues/5395 MDEyOklzc3VlQ29tbWVudDg1MDQ4MzcyNg== keewis 14808389 2021-05-28T15:05:26Z 2021-05-28T15:05:26Z MEMBER

actually, did you try !pip install xarray[complete]?

 
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   ValueError: unrecognized engine zarr must be one of: ['netcdf4', 'scipy', 'store'] 905452377
850480087 https://github.com/pydata/xarray/issues/5395#issuecomment-850480087 https://api.github.com/repos/pydata/xarray/issues/5395 MDEyOklzc3VlQ29tbWVudDg1MDQ4MDA4Nw== keewis 14808389 2021-05-28T14:59:47Z 2021-05-28T14:59:47Z MEMBER

I had to install a few other packages, but it did work for me. Here's what I did: bash mamba env create -n test python=3.7; conda activate test # to get a fresh environment with py37 python -m pip install ipython ipython python In [1]: !pip install zarr xarray fsspec aiohttp requests In [2]: import xarray as xr ...: ds = xr.open_zarr('https://mur-sst.s3.us-west-2.amazonaws.com/zarr-v1',consolidated=True) I don't know anything about Google Colab, though, so there might be something specific you have to do.

output of <tt>xr.show_versions()</tt> ``` INSTALLED VERSIONS ------------------ commit: None python: 3.7.10 | packaged by conda-forge | (default, Feb 19 2021, 16:07:37) [GCC 9.3.0] python-bits: 64 OS: Linux OS-release: 4.19.0-16-amd64 machine: x86_64 processor: byteorder: little libhdf5: None libnetcdf: None xarray: 0.18.2 pandas: 1.2.4 numpy: 1.20.3 scipy: None netCDF4: None pydap: None h5netcdf: None h5py: None Nio: None zarr: 2.8.3 cftime: None nc_time_axis: None PseudoNetCDF: None rasterio: None cfgrib: None iris: None bottleneck: None dask: None distributed: None matplotlib: None cartopy: None seaborn: None numbagg: None pint: None setuptools: 49.6.0.post20210108 pip: 21.1.2 conda: None pytest: None IPython: 7.23.1 sphinx: None ``` 
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   ValueError: unrecognized engine zarr must be one of: ['netcdf4', 'scipy', 'store'] 905452377
850471202 https://github.com/pydata/xarray/issues/5395#issuecomment-850471202 https://api.github.com/repos/pydata/xarray/issues/5395 MDEyOklzc3VlQ29tbWVudDg1MDQ3MTIwMg== iuryt 5797727 2021-05-28T14:46:11Z 2021-05-28T14:46:11Z NONE

As I am using Google Colab I simply installed zarr and xarray using pip (as they suggest) and tried to run the command. python !pip install zarr xarray

Maybe this is something with the way Colab setup things, but it would be nice to have a way to make it work. I am planning to use it in a course and Colab helps to save time on the installing process.

 
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   ValueError: unrecognized engine zarr must be one of: ['netcdf4', 'scipy', 'store'] 905452377
850469040 https://github.com/pydata/xarray/issues/5395#issuecomment-850469040 https://api.github.com/repos/pydata/xarray/issues/5395 MDEyOklzc3VlQ29tbWVudDg1MDQ2OTA0MA== keewis 14808389 2021-05-28T14:42:43Z 2021-05-28T14:42:43Z MEMBER

I got the same error without zarr installed, but this does work for me after installing zarr so I'm inclined to believe there's something wrong with your environment. How did you set it up? 

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   ValueError: unrecognized engine zarr must be one of: ['netcdf4', 'scipy', 'store'] 905452377

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