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  • KeyError pulling from Nasa server with Pydap · 12 ✖
id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
863098508 https://github.com/pydata/xarray/issues/5189#issuecomment-863098508 https://api.github.com/repos/pydata/xarray/issues/5189 MDEyOklzc3VlQ29tbWVudDg2MzA5ODUwOA== d70-t 6574622 2021-06-17T09:49:48Z 2021-06-17T09:49:48Z CONTRIBUTOR

Pydap has several important fixes which have been merged into master already. Nevertheless, the latest release of Pydap is from May 2017, which is before the referenced PR.

 
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   KeyError pulling from Nasa server with Pydap 861684673
824238589 https://github.com/pydata/xarray/issues/5189#issuecomment-824238589 https://api.github.com/repos/pydata/xarray/issues/5189 MDEyOklzc3VlQ29tbWVudDgyNDIzODU4OQ== jsadler2 6943441 2021-04-21T17:38:43Z 2021-04-21T17:38:43Z NONE

Well. That is strange. My version of pydap does not have the fix from the PR submitted to solve the issue: https://github.com/pydap/pydap/pull/151/files. When I implement this in my pydap I don't get that error.

 
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   KeyError pulling from Nasa server with Pydap 861684673
824234023 https://github.com/pydata/xarray/issues/5189#issuecomment-824234023 https://api.github.com/repos/pydata/xarray/issues/5189 MDEyOklzc3VlQ29tbWVudDgyNDIzNDAyMw== jsadler2 6943441 2021-04-21T17:31:11Z 2021-04-21T17:31:11Z NONE

Looks like this is the same issue: https://github.com/pydap/pydap/issues/150

 
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   KeyError pulling from Nasa server with Pydap 861684673
824232570 https://github.com/pydata/xarray/issues/5189#issuecomment-824232570 https://api.github.com/repos/pydata/xarray/issues/5189 MDEyOklzc3VlQ29tbWVudDgyNDIzMjU3MA== jsadler2 6943441 2021-04-21T17:28:36Z 2021-04-21T17:28:36Z NONE

So it seems like it's something specific to the NASA dataset/server

 
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   KeyError pulling from Nasa server with Pydap 861684673
824232141 https://github.com/pydata/xarray/issues/5189#issuecomment-824232141 https://api.github.com/repos/pydata/xarray/issues/5189 MDEyOklzc3VlQ29tbWVudDgyNDIzMjE0MQ== jsadler2 6943441 2021-04-21T17:27:53Z 2021-04-21T17:27:53Z NONE

I tried on a public test dataset and I don't get any error:

python import xarray as xr url = "http://test.opendap.org/opendap/data/nc/sst.mnmean.nc.gz" store = xr.backends.PydapDataStore.open(url) ds = xr.open_dataset(store) ds['sst'].isel(time=0, lat=0, lon=0).values array(-1.8, dtype=float32)

 
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   KeyError pulling from Nasa server with Pydap 861684673
824227019 https://github.com/pydata/xarray/issues/5189#issuecomment-824227019 https://api.github.com/repos/pydata/xarray/issues/5189 MDEyOklzc3VlQ29tbWVudDgyNDIyNzAxOQ== dopplershift 221526 2021-04-21T17:19:21Z 2021-04-21T17:19:21Z CONTRIBUTOR

KeyError: 'tmp2m%2Etmp2m'

This looks like an issue with the encoding of the URL and what the server expects.

 
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   KeyError pulling from Nasa server with Pydap 861684673
824226103 https://github.com/pydata/xarray/issues/5189#issuecomment-824226103 https://api.github.com/repos/pydata/xarray/issues/5189 MDEyOklzc3VlQ29tbWVudDgyNDIyNjEwMw== jsadler2 6943441 2021-04-21T17:17:46Z 2021-04-21T17:17:46Z NONE

Good idea. I'll see if I can find one.

 
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   KeyError pulling from Nasa server with Pydap 861684673
824220498 https://github.com/pydata/xarray/issues/5189#issuecomment-824220498 https://api.github.com/repos/pydata/xarray/issues/5189 MDEyOklzc3VlQ29tbWVudDgyNDIyMDQ5OA== mathause 10194086 2021-04-21T17:08:23Z 2021-04-21T17:08:23Z MEMBER

Would be good to get a publicly available dataset to try to figure this out. 

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   KeyError pulling from Nasa server with Pydap 861684673
822847939 https://github.com/pydata/xarray/issues/5189#issuecomment-822847939 https://api.github.com/repos/pydata/xarray/issues/5189 MDEyOklzc3VlQ29tbWVudDgyMjg0NzkzOQ== mathause 10194086 2021-04-19T23:11:20Z 2021-04-19T23:11:20Z MEMBER

Hmm yes makes sense with such a big dataset. xarray must be converting the integer index to something fancy internally that pydap cannot handle. I am not very familiar with that part of the code, unfortunately.

 
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   KeyError pulling from Nasa server with Pydap 861684673
822833896 https://github.com/pydata/xarray/issues/5189#issuecomment-822833896 https://api.github.com/repos/pydata/xarray/issues/5189 MDEyOklzc3VlQ29tbWVudDgyMjgzMzg5Ng== jsadler2 6943441 2021-04-19T22:36:48Z 2021-04-19T22:36:48Z NONE

I get a timeout error when trying load()

 
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   KeyError pulling from Nasa server with Pydap 861684673
822829654 https://github.com/pydata/xarray/issues/5189#issuecomment-822829654 https://api.github.com/repos/pydata/xarray/issues/5189 MDEyOklzc3VlQ29tbWVudDgyMjgyOTY1NA== jsadler2 6943441 2021-04-19T22:31:50Z 2021-04-19T22:32:33Z NONE

I could try. It's a pretty big dataset though. 38x10^9 data points: 

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   KeyError pulling from Nasa server with Pydap 861684673
822822057 https://github.com/pydata/xarray/issues/5189#issuecomment-822822057 https://api.github.com/repos/pydata/xarray/issues/5189 MDEyOklzc3VlQ29tbWVudDgyMjgyMjA1Nw== mathause 10194086 2021-04-19T22:16:19Z 2021-04-19T22:16:19Z MEMBER

Can you try ds['tmp2m'].load() before calling isel? 

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   KeyError pulling from Nasa server with Pydap 861684673

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