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  • keewis · 11 ✖

issue 1

  • Keep the original ordering of the coordinates · 11 ✖

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  • MEMBER 11
id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
695036123 https://github.com/pydata/xarray/pull/4409#issuecomment-695036123 https://api.github.com/repos/pydata/xarray/issues/4409 MDEyOklzc3VlQ29tbWVudDY5NTAzNjEyMw== keewis 14808389 2020-09-18T19:03:33Z 2020-09-18T19:03:49Z MEMBER

should we merge this before releasing 0.16.1?

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  Keep the original ordering of the coordinates 694448177
691455578 https://github.com/pydata/xarray/pull/4409#issuecomment-691455578 https://api.github.com/repos/pydata/xarray/issues/4409 MDEyOklzc3VlQ29tbWVudDY5MTQ1NTU3OA== keewis 14808389 2020-09-12T09:32:48Z 2020-09-14T11:47:03Z MEMBER

@kmuehlbauer, I modified concat so #4072 and #2811 might already be fixed. Can you confirm?

Edit: at least #4072 does not seem to be fixed yet. ~Good news is that this doesn't seem to depend on a set (i.e. the result does not change with different interpreter sessions)~

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  Keep the original ordering of the coordinates 694448177
691864317 https://github.com/pydata/xarray/pull/4409#issuecomment-691864317 https://api.github.com/repos/pydata/xarray/issues/4409 MDEyOklzc3VlQ29tbWVudDY5MTg2NDMxNw== keewis 14808389 2020-09-14T07:10:08Z 2020-09-14T07:10:08Z MEMBER

thanks for checking!

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  Keep the original ordering of the coordinates 694448177
691298627 https://github.com/pydata/xarray/pull/4409#issuecomment-691298627 https://api.github.com/repos/pydata/xarray/issues/4409 MDEyOklzc3VlQ29tbWVudDY5MTI5ODYyNw== keewis 14808389 2020-09-11T20:31:31Z 2020-09-11T20:31:31Z MEMBER

the tests pass so this should be ready for review

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  Keep the original ordering of the coordinates 694448177
691245402 https://github.com/pydata/xarray/pull/4409#issuecomment-691245402 https://api.github.com/repos/pydata/xarray/issues/4409 MDEyOklzc3VlQ29tbWVudDY5MTI0NTQwMg== keewis 14808389 2020-09-11T18:23:09Z 2020-09-11T18:23:09Z MEMBER

"mix up" in this case means that the order is random (i.e. a set was involved). Sorry if that was unclear.

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  Keep the original ordering of the coordinates 694448177
691242257 https://github.com/pydata/xarray/pull/4409#issuecomment-691242257 https://api.github.com/repos/pydata/xarray/issues/4409 MDEyOklzc3VlQ29tbWVudDY5MTI0MjI1Nw== keewis 14808389 2020-09-11T18:16:05Z 2020-09-11T18:16:05Z MEMBER

thanks, that almost fixed the doctests. However, concat seems to somehow also mix up the coordinates / dimensions. I tried to fix that by not iterating over a set, but I'm totally not sure if there's a better fix.

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  Keep the original ordering of the coordinates 694448177
691208282 https://github.com/pydata/xarray/pull/4409#issuecomment-691208282 https://api.github.com/repos/pydata/xarray/issues/4409 MDEyOklzc3VlQ29tbWVudDY5MTIwODI4Mg== keewis 14808389 2020-09-11T17:00:07Z 2020-09-11T17:00:07Z MEMBER

unfortunately, that's pretty difficult: the set in question is Dataset._coord_names, and there would be a lot to rewrite if we tried to change that to a list. Just for reference, the method where the reordering happens is Dataset._copy_listed.

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  Keep the original ordering of the coordinates 694448177
691157835 https://github.com/pydata/xarray/pull/4409#issuecomment-691157835 https://api.github.com/repos/pydata/xarray/issues/4409 MDEyOklzc3VlQ29tbWVudDY5MTE1NzgzNQ== keewis 14808389 2020-09-11T15:19:40Z 2020-09-11T15:21:56Z MEMBER

yes, sorry, you're right, that is indeed non-deterministic, and exactly the problem I'm having with the doctests.

Interestingly, this seems to be deterministic per python session: running ```python import xarray as xr

ds = xr.Dataset( {"a": (("x", "y"), [[0, 1], [2, 3]])}, coords={"x": ["a", "b"], "y": [0, 1]} ) print(ds) print(ds + 1) print(ds) print(ds + 1) `` will print the same result fordsandds + 1`, but when rerunning in a new session, the coordinate order may be changed (more coordinates increase the probability for the change).

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  Keep the original ordering of the coordinates 694448177
691136159 https://github.com/pydata/xarray/pull/4409#issuecomment-691136159 https://api.github.com/repos/pydata/xarray/issues/4409 MDEyOklzc3VlQ29tbWVudDY5MTEzNjE1OQ== keewis 14808389 2020-09-11T14:41:39Z 2020-09-11T14:44:03Z MEMBER

I think that's still deterministic (although I agree that the change in the title is annoying): if you run your script multiple times, it will always return the same output. The issue I'm trying to fix here is much worse: the output of the same code will return different results with each run.

Edit: but maybe I just have a messed up environment

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  Keep the original ordering of the coordinates 694448177
691037092 https://github.com/pydata/xarray/pull/4409#issuecomment-691037092 https://api.github.com/repos/pydata/xarray/issues/4409 MDEyOklzc3VlQ29tbWVudDY5MTAzNzA5Mg== keewis 14808389 2020-09-11T11:23:26Z 2020-09-11T14:28:41Z MEMBER

Can you give an example of a non-deterministic coordinate order

sure, just try running python -m pytest --doctest-modules xarray --ignore xarray/tests. For me at least (with the environment created by py38.yml), xarray.core.common.DataWithCoords.pipe, xarray.core.groupby.GroupBy.quantile and xarray.core.dataset.Dataset.filter_by_attrs pass or fail at random: in one run they pass, in the next they fail because a different ordering was used for the coordinates (see also #4408).

I think users find it a little more intuitive to preserve the order of dict keys.

Not sure if that's evidence against this (maybe we need to rearrange the repr to really fix it), but in #4072 someone confused the order of the printed coordinates with the order of the dimensions. I'd think it's much easier to tell people that these are alphabetically sorted, no matter what they do, so they shouldn't try to read the dimension order from the coordinates (same with the dimension summary).

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  Keep the original ordering of the coordinates 694448177
687919197 https://github.com/pydata/xarray/pull/4409#issuecomment-687919197 https://api.github.com/repos/pydata/xarray/issues/4409 MDEyOklzc3VlQ29tbWVudDY4NzkxOTE5Nw== keewis 14808389 2020-09-06T22:27:50Z 2020-09-06T23:02:50Z MEMBER

thanks for the hint, sorting in __init__ should be possible and might even be easier than sorting when formatting. However, 3.7 is the first version of python (the language) which includes the insertion-order preservation introduced in CPython 3.6. Do we have to bump the supported python version for that, or is it fine to keep the current behavior for a non-CPython python<3.7 (if we ever supported a language other than CPython)?

Edit: that breaks two of the iris tests, which seem to depend on the order of the coords. Maybe we should change that?

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  Keep the original ordering of the coordinates 694448177

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