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- sel along 1D non-index coordinates · 13 ✖
id | html_url | issue_url | node_id | user | created_at | updated_at ▲ | author_association | body | reactions | performed_via_github_app | issue |
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1239471756 | https://github.com/pydata/xarray/pull/3925#issuecomment-1239471756 | https://api.github.com/repos/pydata/xarray/issues/3925 | IC_kwDOAMm_X85J4NaM | mathause 10194086 | 2022-09-07T14:31:58Z | 2022-09-07T14:31:58Z | MEMBER | With #6971 on the way I guess we can close this. |
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sel along 1D non-index coordinates 592312709 | |
1146877063 | https://github.com/pydata/xarray/pull/3925#issuecomment-1146877063 | https://api.github.com/repos/pydata/xarray/issues/3925 | IC_kwDOAMm_X85EW_SH | ivanakcheurov 5347026 | 2022-06-05T20:18:26Z | 2022-06-05T20:18:26Z | NONE |
@benbovy, please could you give an example how it is possible?
I would like sel based on a non-dim coordinate(using this coordinate directly .sel(product_id=26) would result in error "'no index found for coordinate product_id")%timeit xds.sel(product=xds.product_id==26) 1.54 ms ± 64.2 µs per loop (mean ± std. dev. of 7 runs, 100 loops each) sel based on the dim itself%timeit xds.sel(product='GN91 Glove Medium') 499 µs ± 16.1 µs per loop (mean ± std. dev. of 7 runs, 1000 loops each) %timeit xds.where(xds.product_id==26, drop=True) 4.17 ms ± 39 µs per loop (mean ± std. dev. of 7 runs, 100 loops each) ``` |
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926049276 | https://github.com/pydata/xarray/pull/3925#issuecomment-926049276 | https://api.github.com/repos/pydata/xarray/issues/3925 | IC_kwDOAMm_X843MmP8 | TomNicholas 35968931 | 2021-09-23T18:20:50Z | 2021-09-23T18:21:12Z | MEMBER | FYI I probably am not going to work on this PR again - especially as I remember getting quite confused by the indexing internals, which have now changed. If we can just wait for this feature to be enabled via the indexing refactor then I would rather just do that. Perhaps I should close this? |
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925694605 | https://github.com/pydata/xarray/pull/3925#issuecomment-925694605 | https://api.github.com/repos/pydata/xarray/issues/3925 | IC_kwDOAMm_X843LPqN | benbovy 4160723 | 2021-09-23T10:37:07Z | 2021-09-23T10:37:07Z | MEMBER | In #5692 it is possible to perform selection using non-dimension coordinates with an index, although there's no easy way yet to set an index for such coordinates (this will be done in a follow-up PR by updating the API of |
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794116358 | https://github.com/pydata/xarray/pull/3925#issuecomment-794116358 | https://api.github.com/repos/pydata/xarray/issues/3925 | MDEyOklzc3VlQ29tbWVudDc5NDExNjM1OA== | benbovy 4160723 | 2021-03-09T16:23:17Z | 2021-03-09T16:23:17Z | MEMBER |
I think it's a good use case for some kind of |
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sel along 1D non-index coordinates 592312709 | |
609821244 | https://github.com/pydata/xarray/pull/3925#issuecomment-609821244 | https://api.github.com/repos/pydata/xarray/issues/3925 | MDEyOklzc3VlQ29tbWVudDYwOTgyMTI0NA== | max-sixty 5635139 | 2020-04-06T14:14:34Z | 2020-04-06T14:14:34Z | MEMBER | OK! May be a sizeable change but I update on @shoyer 's view, let's do it. |
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609472798 | https://github.com/pydata/xarray/pull/3925#issuecomment-609472798 | https://api.github.com/repos/pydata/xarray/issues/3925 | MDEyOklzc3VlQ29tbWVudDYwOTQ3Mjc5OA== | shoyer 1217238 | 2020-04-05T19:53:44Z | 2020-04-05T19:53:44Z | MEMBER | Related to my microbenchmark, it might also be worth considering pure NumPy versions of common indexing operations, to avoid the need to repeatedly create hash-tables. But that could be quite a bit of work to do comprehensively. |
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sel along 1D non-index coordinates 592312709 | |
609471635 | https://github.com/pydata/xarray/pull/3925#issuecomment-609471635 | https://api.github.com/repos/pydata/xarray/issues/3925 | MDEyOklzc3VlQ29tbWVudDYwOTQ3MTYzNQ== | shoyer 1217238 | 2020-04-05T19:45:07Z | 2020-04-05T19:45:07Z | MEMBER | I think this is generally a good idea! In the future, creating an One minor concern I have here is about efficiency: building an Here's an microbenchmark that hopefully illustrates the issue: ``` import pandas as pd import numpy as np def lookup_preindexed(needle, index): return index.get_loc(needle) def lookup_newindex(needle, haystack): return lookup_preindexed(needle, pd.Index(haystack)) def lookup_numpy(needle, haystack): return (haystack == needle).argmax() haystack = np.random.permutation(np.arange(1000000)) index = pd.Index(haystack) %timeit lookup_newindex(0, haystack) # 56.1 ms per loop %timeit lookup_preindexed(0, index) # 696 ns per loop %timeit lookup_numpy(0, haystack) # 517 µs per loop ``` pandas is 1000x faster than NumPy if the index is pre-existing, but 100x slower if the index is new. That's a 1e5 fold slow-down! I think users will appreciate the flexibility, but if there's some way we warn users that they really should set the index ahead of time when they are doing repeating indexing that could also be welcome. Figuring out how to save the state for counting the number of times a new index is created could be pretty messy, though. I guess we could stuff it into |
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608018692 | https://github.com/pydata/xarray/pull/3925#issuecomment-608018692 | https://api.github.com/repos/pydata/xarray/issues/3925 | MDEyOklzc3VlQ29tbWVudDYwODAxODY5Mg== | TomNicholas 35968931 | 2020-04-02T18:08:32Z | 2020-04-02T18:08:32Z | MEMBER | Gotcha, thanks. Hmm, this seems like a grey area... I think selecting along 1D non-dimension coords is probably way more common than along 2D coords, but I'm biased.
BTW I can immediately think of at least one other place where this rule is broken (#3774) - where going from 0D coords to 1D coords of length 1 changes whether |
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608014672 | https://github.com/pydata/xarray/pull/3925#issuecomment-608014672 | https://api.github.com/repos/pydata/xarray/issues/3925 | MDEyOklzc3VlQ29tbWVudDYwODAxNDY3Mg== | max-sixty 5635139 | 2020-04-02T18:01:11Z | 2020-04-02T18:01:11Z | MEMBER |
Of course. I mean that if someone changes the dimensionality of a non-index coord from 1D to 2D, then running Whereas now, neither would work. Which in some ways is worse, but also less surprising. I think these are always difficult trade-offs... |
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sel along 1D non-index coordinates 592312709 | |
608000289 | https://github.com/pydata/xarray/pull/3925#issuecomment-608000289 | https://api.github.com/repos/pydata/xarray/issues/3925 | MDEyOklzc3VlQ29tbWVudDYwODAwMDI4OQ== | TomNicholas 35968931 | 2020-04-02T17:44:39Z | 2020-04-02T17:44:39Z | MEMBER |
Sorry, could you explain what you mean here? How would this PR violate that? |
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607977635 | https://github.com/pydata/xarray/pull/3925#issuecomment-607977635 | https://api.github.com/repos/pydata/xarray/issues/3925 | MDEyOklzc3VlQ29tbWVudDYwNzk3NzYzNQ== | max-sixty 5635139 | 2020-04-02T17:14:41Z | 2020-04-02T17:14:41Z | MEMBER | I think the functionality is useful, but I'm concerned it would make the API more confusing. In particular, one maxim we've generally held is that changing the number of dimensions doesn't change functionality. (ofc it changes whether it's possible to create an index, though the indexing API doesn't change) What are others' thoughts? |
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607584705 | https://github.com/pydata/xarray/pull/3925#issuecomment-607584705 | https://api.github.com/repos/pydata/xarray/issues/3925 | MDEyOklzc3VlQ29tbWVudDYwNzU4NDcwNQ== | pep8speaks 24736507 | 2020-04-02T02:24:04Z | 2020-04-02T02:24:04Z | NONE | Hello @TomNicholas! Thanks for opening this PR. We checked the lines you've touched for PEP 8 issues, and found:
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