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  • shoyer · 5 ✖

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id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
74811395 https://github.com/pydata/xarray/issues/316#issuecomment-74811395 https://api.github.com/repos/pydata/xarray/issues/316 MDEyOklzc3VlQ29tbWVudDc0ODExMzk1 shoyer 1217238 2015-02-18T04:45:25Z 2015-02-18T04:45:25Z MEMBER

Made a new issue for datetime decoding error handling: #323

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  Not-quite-ISO timestamps 56817968
73756512 https://github.com/pydata/xarray/issues/316#issuecomment-73756512 https://api.github.com/repos/pydata/xarray/issues/316 MDEyOklzc3VlQ29tbWVudDczNzU2NTEy shoyer 1217238 2015-02-10T18:40:12Z 2015-02-10T18:40:12Z MEMBER

I agree, this is not ideal. We really should try to decode time units at the time a dataset is opened, not just when the values are read (which open leads to a failed repr()). Adding some sort of more helpful error message to catch exception that arise would also help (e.g., "cannot read non-ISO time units: netCDF4 not installed").

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  Not-quite-ISO timestamps 56817968
73619315 https://github.com/pydata/xarray/issues/316#issuecomment-73619315 https://api.github.com/repos/pydata/xarray/issues/316 MDEyOklzc3VlQ29tbWVudDczNjE5MzE1 shoyer 1217238 2015-02-10T00:12:57Z 2015-02-10T00:12:57Z MEMBER

Yes, if you want to give it a shot, that would be great!

The only thing to watch out for is that netCDF4/netcdftime is an optional dependency, so you need to ensure that test methods are properly decorated with requires_netCDF4; otherwise the CI tests will fail. I'm not too concerned about being able to decode datetime units without netCDF4 installed, though I suppose that would be nice to maintain if possible (just import netcdftime locally when the fallback is used).

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  Not-quite-ISO timestamps 56817968
73289825 https://github.com/pydata/xarray/issues/316#issuecomment-73289825 https://api.github.com/repos/pydata/xarray/issues/316 MDEyOklzc3VlQ29tbWVudDczMjg5ODI1 shoyer 1217238 2015-02-06T18:42:32Z 2015-02-06T18:42:32Z MEMBER

It looks like netcdftime (part of the netCDF4 package) can parse this string correctly, so we should probably fall back to using that:

In [26]: netcdftime.num2date(0, 'hours since 1981-1-10 0') Out[26]: datetime.datetime(1981, 1, 10, 0, 0)

The other possibility is adding a datetime_format argument to open_dataset.

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  Not-quite-ISO timestamps 56817968
73276393 https://github.com/pydata/xarray/issues/316#issuecomment-73276393 https://api.github.com/repos/pydata/xarray/issues/316 MDEyOklzc3VlQ29tbWVudDczMjc2Mzkz shoyer 1217238 2015-02-06T17:21:18Z 2015-02-06T17:21:18Z MEMBER

What a hassle! Unfortunately my experience has been that non-ISO conformant time units are not uncommon. I'll take a look into this.

We did add one fix to improve the time unit parsing since the last release. You might want to try installing the dev version off github to see if it fixes your issue. Otherwise you can also do the sort of fixup you describe by loading the dataset with decode_cf=False, fixing the metadata and then calling xray.decode_cf.

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  Not-quite-ISO timestamps 56817968

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