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  • dnowacki-usgs · 2 ✖

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  • interpolate_na: Add max_gap support. · 2 ✖

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  • CONTRIBUTOR 2
id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
549595749 https://github.com/pydata/xarray/pull/3302#issuecomment-549595749 https://api.github.com/repos/pydata/xarray/issues/3302 MDEyOklzc3VlQ29tbWVudDU0OTU5NTc0OQ== dnowacki-usgs 13837821 2019-11-04T23:34:12Z 2019-11-04T23:34:12Z CONTRIBUTOR

Thanks for all your work @dcherian! Did a quick test with some real-world timeseries data I've been wanting to use with max_gap and it looks good to me. I will definitely be using this in the future! 👍

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  interpolate_na: Add max_gap support. 492866552
543393942 https://github.com/pydata/xarray/pull/3302#issuecomment-543393942 https://api.github.com/repos/pydata/xarray/issues/3302 MDEyOklzc3VlQ29tbWVudDU0MzM5Mzk0Mg== dnowacki-usgs 13837821 2019-10-17T22:48:45Z 2019-10-17T22:51:36Z CONTRIBUTOR

Thanks so much for taking this on. Not sure how I missed the notification that you had done so.

@dcherian I checked out your branch and did some testing and found that testing this against dim="x" fails with a ValueError. ```python arr = np.array([ [np.nan, np.nan, np.nan, 1, 2, 3, 4, np.nan, 6, 7, np.nan, np.nan, np.nan, 11, np.nan, np.nan, ], [np.nan, np.nan, np.nan, 1, 2, 3, np.nan, np.nan, 6, 7, np.nan, np.nan, np.nan, 11, np.nan, np.nan, ], [np.nan, np.nan, np.nan, 1, 2, 3, np.nan, np.nan, 6, 7, np.nan, np.nan, np.nan, 11, np.nan, np.nan, ], [np.nan, np.nan, np.nan, 1, 2, 3, 4, np.nan, 6, 7, np.nan, np.nan, np.nan, 11, np.nan, np.nan, ], ])

da = xr.DataArray(arr, dims=["x", "y"], coords={"x": np.arange(arr.shape[0]), "y": np.arange(arr.shape[1])})

actual = da.interpolate_na("y", max_gap=2) # this works as in your test example actual = da.interpolate_na("x", max_gap=2) # this fails Error:

actual = da.interpolate_na("x", max_gap=2) Traceback (most recent call last): File "<stdin>", line 1, in <module> File "/Users/dnowacki/Documents/xarray/xarray/core/dataarray.py", line 2026, in interpolate_na **kwargs File "/Users/dnowacki/Documents/xarray/xarray/core/missing.py", line 302, in interp_na nan_block_lengths = _get_nan_block_lengths(self, dim, index) File "/Users/dnowacki/Documents/xarray/xarray/core/missing.py", line 23, in _get_nan_block_lengths arange = ones_like(obj) * index + (index[1] - index[0]) File "/Users/dnowacki/Documents/xarray/xarray/core/dataarray.py", line 2500, in func if not reflexive File "/Users/dnowacki/Documents/xarray/xarray/core/variable.py", line 1884, in func if not reflexive ValueError: operands could not be broadcast together with shapes (4,16) (4,) ```

I fixed it by changing this line https://github.com/dcherian/xarray/blob/8899f05a13533e10c8972836afda089b5b792ca0/xarray/core/missing.py#L23 to this: python if index.shape[0] == obj.shape[0]: arange = ones_like(obj) * index[:, None] + (index[1] - index[0]) else: arange = ones_like(obj) * index + (index[1] - index[0]) Does this seem reasonable?

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  interpolate_na: Add max_gap support. 492866552

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