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  • keewis · 10 ✖

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  • Add an example of ERA5 and GRIB data & visualization to the gallery · 10 ✖

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538424892 https://github.com/pydata/xarray/pull/3199#issuecomment-538424892 https://api.github.com/repos/pydata/xarray/issues/3199 MDEyOklzc3VlQ29tbWVudDUzODQyNDg5Mg== keewis 14808389 2019-10-04T14:38:49Z 2019-10-04T14:38:49Z MEMBER

looking at this once again, there are a lot of projects that don't install (eg aiohttp (build), but I'm not sure how this is set up or which parts of their configuration comes from somewhere other than their .readthedocs.yml).

Also, it seems we are using the old version of readthedocs.yml.

And finally, it seems strange to me that the scipy19-docs fails but master doesn't, which means that master does something different?

As I don't have access to readthedocs I can't really experiment on these suggestions (making this informed guessing at best), so I would like to leave the tracking down and fixing to someone else.

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  Add an example of ERA5 and GRIB data & visualization to the gallery 479063574
535224907 https://github.com/pydata/xarray/pull/3199#issuecomment-535224907 https://api.github.com/repos/pydata/xarray/issues/3199 MDEyOklzc3VlQ29tbWVudDUzNTIyNDkwNw== keewis 14808389 2019-09-25T21:16:11Z 2019-09-25T22:50:41Z MEMBER

I'm currently not planning to because I will probably be offline for the next few days

Edit: the only workaround I can imagine is building the docs without installing (which is mentioned in the docs), but I neither know why the current configuration is the way it is or how building the docs without installing works with RTD

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534735363 https://github.com/pydata/xarray/pull/3199#issuecomment-534735363 https://api.github.com/repos/pydata/xarray/issues/3199 MDEyOklzc3VlQ29tbWVudDUzNDczNTM2Mw== keewis 14808389 2019-09-24T20:31:22Z 2019-09-24T20:31:22Z MEMBER

it seems all of these problems boil down to that single command. What gets executed is (essentially) bash $ python -m pip install --upgrade --upgrade-strategy eager . which upgrades pandas to 0.25.1, but leaves dask as is because it is an optional dependency. This, however, defeats the purpose of version pinning in the conda file (or a requirements file).

I can't find an option to tell readthedocs to install without the eager upgrade (normal upgrade is fine). Maybe ask support? The addition of the upgrade strategy happened in readthedocs/readthedocs.org#5635

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  Add an example of ERA5 and GRIB data & visualization to the gallery 479063574
534642189 https://github.com/pydata/xarray/pull/3199#issuecomment-534642189 https://api.github.com/repos/pydata/xarray/issues/3199 MDEyOklzc3VlQ29tbWVudDUzNDY0MjE4OQ== keewis 14808389 2019-09-24T16:38:29Z 2019-09-24T16:38:59Z MEMBER

After some experimentation, it seems this is only the case if setup.py install is used, not with pip install: for me, at least, in the commands from https://github.com/pydata/xarray/pull/3199#issuecomment-534342306, replacing bash $ python setup.py install --force with bash $ python -m pip install . makes this work, even without the merge commit.

The docs on the settings mention pip_install, maybe use that?

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  Add an example of ERA5 and GRIB data & visualization to the gallery 479063574
534607562 https://github.com/pydata/xarray/pull/3199#issuecomment-534607562 https://api.github.com/repos/pydata/xarray/issues/3199 MDEyOklzc3VlQ29tbWVudDUzNDYwNzU2Mg== keewis 14808389 2019-09-24T15:17:39Z 2019-09-24T16:08:24Z MEMBER

The problem is still the same: while the output of the environment printed by sphinx lists the new version as xarray 0.13.0+22.gaeb15b56 pypi_0 pypi which in theory should be used, but building the docs prints this: xarray: 0.13.0, /home/docs/checkouts/readthedocs.org/user_builds/xray/conda/scipy19-docs/lib/python3.7/site-packages/xarray/__init__.py which does not have the version of open_dataset that allows non-nc files. Honestly, I'm no expert on imports and version management, so I don't know what the best fix for this is.

Something that comes to mind is waiting for a new release with the new version of open_dataset, but that is not an immediate fix (and only a workaround at best).

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  Add an example of ERA5 and GRIB data & visualization to the gallery 479063574
534352985 https://github.com/pydata/xarray/pull/3199#issuecomment-534352985 https://api.github.com/repos/pydata/xarray/issues/3199 MDEyOklzc3VlQ29tbWVudDUzNDM1Mjk4NQ== keewis 14808389 2019-09-24T01:50:42Z 2019-09-24T02:01:51Z MEMBER

err, well, this is somewhat confusing: I'm not sure what pulls it, but it seems something depends on xarray (installed in the creation of the environment). The version that is conda-installed is 0.13.0, so as master does not have the new version of open_dataset that does not enforce ".nc" files, the 404 happens. In short, the version from setup.py install gets shadowed, I guess because the version is 0.12.3? In that case, merging master into scipy19-docs might fix this?

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534342306 https://github.com/pydata/xarray/pull/3199#issuecomment-534342306 https://api.github.com/repos/pydata/xarray/issues/3199 MDEyOklzc3VlQ29tbWVudDUzNDM0MjMwNg== keewis 14808389 2019-09-24T00:58:49Z 2019-09-24T00:58:49Z MEMBER

(roughly) following the instructions in the build log, I can reproduce it raising a 404: bash $ conda env create --quiet --name scipy19-docs --file doc/environment.yml $ conda install --yes --quiet --name scipy19-docs mock pillow sphinx sphinx_rtd_theme (scipy19-docs)$ python -m pip install -U recommonmark readthedocs-sphinx-ext (scipy19-docs)$ python setup.py install --force (scipy19-docs)$ cd doc; make html I didn't check yet, but maybe the second conda install should not happen, as all those get installed on env creation?

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  Add an example of ERA5 and GRIB data & visualization to the gallery 479063574
534301971 https://github.com/pydata/xarray/pull/3199#issuecomment-534301971 https://api.github.com/repos/pydata/xarray/issues/3199 MDEyOklzc3VlQ29tbWVudDUzNDMwMTk3MQ== keewis 14808389 2019-09-23T21:59:35Z 2019-09-23T21:59:35Z MEMBER

that seems to have worked, the failures should be unrelated.

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  Add an example of ERA5 and GRIB data & visualization to the gallery 479063574
534297108 https://github.com/pydata/xarray/pull/3199#issuecomment-534297108 https://api.github.com/repos/pydata/xarray/issues/3199 MDEyOklzc3VlQ29tbWVudDUzNDI5NzEwOA== keewis 14808389 2019-09-23T21:42:56Z 2019-09-23T21:42:56Z MEMBER

unless something else is wrong, either modifying the md5 file (remove the newline) or adding strip() to f.read() in tutorial.open_dataset should fix the md5 check.

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  Add an example of ERA5 and GRIB data & visualization to the gallery 479063574
532302896 https://github.com/pydata/xarray/pull/3199#issuecomment-532302896 https://api.github.com/repos/pydata/xarray/issues/3199 MDEyOklzc3VlQ29tbWVudDUzMjMwMjg5Ng== keewis 14808389 2019-09-17T16:43:20Z 2019-09-17T17:45:52Z MEMBER

I'm not sure if this helps you, but I noticed two issues in xr.tutorial.open_dataset: first, it requires the file extension to be ".nc" (resulting in a 404 when fetching the file. The version from the scipy19-docs branch does not have that issue), and second, there is a newline in the md5 file. Modifying remotemd5 = f.read() to remotemd5 = f.read().strip() should do the trick.

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  Add an example of ERA5 and GRIB data & visualization to the gallery 479063574

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