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- apply_ufunc should preemptively broadcast · 11 ✖
id | html_url | issue_url | node_id | user | created_at | updated_at ▲ | author_association | body | reactions | performed_via_github_app | issue |
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503768609 | https://github.com/pydata/xarray/issues/3032#issuecomment-503768609 | https://api.github.com/repos/pydata/xarray/issues/3032 | MDEyOklzc3VlQ29tbWVudDUwMzc2ODYwOQ== | OriolAbril 23738400 | 2019-06-19T22:23:21Z | 2019-06-19T22:23:21Z | CONTRIBUTOR | @max-sixty Not at all, whatever is best. I actually opened the issue without being 100% it was one. |
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apply_ufunc should preemptively broadcast 457716471 | |
503747413 | https://github.com/pydata/xarray/issues/3032#issuecomment-503747413 | https://api.github.com/repos/pydata/xarray/issues/3032 | MDEyOklzc3VlQ29tbWVudDUwMzc0NzQxMw== | max-sixty 5635139 | 2019-06-19T21:09:18Z | 2019-06-19T21:09:18Z | MEMBER | @shoyer thanks for the clarity @OriolAbril would you mind if we changed this issue to "apply_ufunc should preemptively broadcast" |
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apply_ufunc should preemptively broadcast 457716471 | |
503746105 | https://github.com/pydata/xarray/issues/3032#issuecomment-503746105 | https://api.github.com/repos/pydata/xarray/issues/3032 | MDEyOklzc3VlQ29tbWVudDUwMzc0NjEwNQ== | shoyer 1217238 | 2019-06-19T21:04:56Z | 2019-06-19T21:04:56Z | MEMBER | With NumPy arrays at least, there is no cost for broadcasting, because it can always be done with views. But even for other array types, inserting size 1 dimensions in the correct location should be basically free, and would be more helpful than what we currently do On Wed, Jun 19, 2019 at 9:25 PM Oriol Abril notifications@github.com wrote:
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apply_ufunc should preemptively broadcast 457716471 | |
503675891 | https://github.com/pydata/xarray/issues/3032#issuecomment-503675891 | https://api.github.com/repos/pydata/xarray/issues/3032 | MDEyOklzc3VlQ29tbWVudDUwMzY3NTg5MQ== | OriolAbril 23738400 | 2019-06-19T18:25:14Z | 2019-06-19T18:25:14Z | CONTRIBUTOR |
Even if there were a performance cost (compared to the actual behaviour), it could be easily avoided by using all dims as input_core_dims couldn't it? IIUC, all dims should be broadcasted unless they are in input core dims, so it broadcasting could still be avoided without problem. |
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apply_ufunc should preemptively broadcast 457716471 | |
503652824 | https://github.com/pydata/xarray/issues/3032#issuecomment-503652824 | https://api.github.com/repos/pydata/xarray/issues/3032 | MDEyOklzc3VlQ29tbWVudDUwMzY1MjgyNA== | max-sixty 5635139 | 2019-06-19T17:21:34Z | 2019-06-19T17:21:34Z | MEMBER | I'm trying to think whether there would be any performance cost there - i.e. are there any arrays where preemptive broadcasting would be both expensive and unnecessary? |
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apply_ufunc should preemptively broadcast 457716471 | |
503650578 | https://github.com/pydata/xarray/issues/3032#issuecomment-503650578 | https://api.github.com/repos/pydata/xarray/issues/3032 | MDEyOklzc3VlQ29tbWVudDUwMzY1MDU3OA== | shoyer 1217238 | 2019-06-19T17:15:32Z | 2019-06-19T17:15:32Z | MEMBER | Yes, exactly. |
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apply_ufunc should preemptively broadcast 457716471 | |
503625092 | https://github.com/pydata/xarray/issues/3032#issuecomment-503625092 | https://api.github.com/repos/pydata/xarray/issues/3032 | MDEyOklzc3VlQ29tbWVudDUwMzYyNTA5Mg== | max-sixty 5635139 | 2019-06-19T16:04:58Z | 2019-06-19T16:04:58Z | MEMBER |
To confirm, so that we have something like this? ```python xr.apply_ufunc(func, a, c) Out(7, 3, 5, 6)(7, 3, 5, 6)``` |
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apply_ufunc should preemptively broadcast 457716471 | |
503618955 | https://github.com/pydata/xarray/issues/3032#issuecomment-503618955 | https://api.github.com/repos/pydata/xarray/issues/3032 | MDEyOklzc3VlQ29tbWVudDUwMzYxODk1NQ== | shoyer 1217238 | 2019-06-19T15:50:03Z | 2019-06-19T15:50:03Z | MEMBER | For what it's worth, I agree that this behavior is a little surprising. We should probably make |
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apply_ufunc should preemptively broadcast 457716471 | |
503337637 | https://github.com/pydata/xarray/issues/3032#issuecomment-503337637 | https://api.github.com/repos/pydata/xarray/issues/3032 | MDEyOklzc3VlQ29tbWVudDUwMzMzNzYzNw== | max-sixty 5635139 | 2019-06-18T22:37:42Z | 2019-06-18T22:42:14Z | MEMBER | Because ```python In [8]: import xarray as xr ...: import numpy as np ...: ...: a = xr.DataArray(data=np.random.normal(size=(7, 3)), dims=["dim1", "dim2"]) ...: c = xr.DataArray(data=np.random.normal(size=(7, 6)), dims=["dim1", "dim4"]) # <- change here ...: ...: def func(x,y): ...: print(x.shape) ...: print(y.shape) ...: return x ...: In [9]: xr.apply_ufunc(func, a, c) (7, 3, 1) (7, 1, 6) ``` ...otherwise Another option would be for your original example to put lengths of 1 in all axes, rather than only 'forward filling', e.g. ``` xr.apply_ufunc(func, a, c) Out(7, 3, 1, 1)(1, 1, 5, 6) # <- change here``` I think it operates without that step because functions 'in the wild' generally will handle that themselves, but that's a guess and needs someone who knows this better to weight in |
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apply_ufunc should preemptively broadcast 457716471 | |
503335417 | https://github.com/pydata/xarray/issues/3032#issuecomment-503335417 | https://api.github.com/repos/pydata/xarray/issues/3032 | MDEyOklzc3VlQ29tbWVudDUwMzMzNTQxNw== | OriolAbril 23738400 | 2019-06-18T22:28:20Z | 2019-06-18T22:28:20Z | CONTRIBUTOR | Then shouldn't |
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apply_ufunc should preemptively broadcast 457716471 | |
503334445 | https://github.com/pydata/xarray/issues/3032#issuecomment-503334445 | https://api.github.com/repos/pydata/xarray/issues/3032 | MDEyOklzc3VlQ29tbWVudDUwMzMzNDQ0NQ== | max-sixty 5635139 | 2019-06-18T22:24:16Z | 2019-06-18T22:24:16Z | MEMBER | Thanks for the issue & code sample @OriolAbril IIUC,
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apply_ufunc should preemptively broadcast 457716471 |
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