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- Dataset.copy(deep=True) does not deepcopy .attrs · 12 ✖
id | html_url | issue_url | node_id | user | created_at | updated_at ▲ | author_association | body | reactions | performed_via_github_app | issue |
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1256553736 | https://github.com/pydata/xarray/issues/2835#issuecomment-1256553736 | https://api.github.com/repos/pydata/xarray/issues/2835 | IC_kwDOAMm_X85K5X0I | phockett 4447466 | 2022-09-23T18:47:58Z | 2022-09-27T15:00:51Z | CONTRIBUTOR | Just for the record, I just ran into this for the specific case of nested dictionary attrs in Dataarray.attrs. It's definitely an issue in 2022.3.0 and 2022.6.0. Here's a minimal test example in case anyone else runs into this too... ```python MINIMAL EXAMPLEimport xarray as xr import numpy as np data = xr.DataArray(np.random.randn(2, 3), dims=("x", "y"), coords={"x": [10, 20]}) data.attrs['flat']='0' data.attrs['nested']={'level1':'1'} data2 = data.copy(deep=True) data2.attrs['flat']='2' # OK data2.attrs['nested']={'level1':'2'} # OKdata2.attrs['nested']['level1'] = '2' # Fails - overwrites datadata2.attrs['nested'].update({'level1':'2'}) # Fails - overwrites data print(data.attrs) print(data2.attrs) ``` Outputs In XR 2022.3.0 and 2022.6.0 this gives (incorrect): ``` {'flat': '0', 'nested': {'level1': '2'}} {'flat': '2', 'nested': {'level1': '2'}} ``` As a work-around, safe attrs copy with deepcopy works: ```python data2 = data.copy(deep=True) data2.attrs = copy.deepcopy(data.attrs) ``` With correct results after modification: ``` {'flat': '0', 'nested': {'level1': '1'}} {'flat': '2', 'nested': {'level1': '2'}} ``` EDIT 26th Sept: retested in 2022.6.0 and found it was, in fact, failing there too. Updated comment to reflect this. |
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Dataset.copy(deep=True) does not deepcopy .attrs 423742774 | |
1258611190 | https://github.com/pydata/xarray/issues/2835#issuecomment-1258611190 | https://api.github.com/repos/pydata/xarray/issues/2835 | IC_kwDOAMm_X85LBOH2 | phockett 4447466 | 2022-09-26T20:43:01Z | 2022-09-26T20:43:01Z | CONTRIBUTOR |
Sorry for the mix-up there - think I initially tested in 2022.6 with the extra |
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Dataset.copy(deep=True) does not deepcopy .attrs 423742774 | |
1258593420 | https://github.com/pydata/xarray/issues/2835#issuecomment-1258593420 | https://api.github.com/repos/pydata/xarray/issues/2835 | IC_kwDOAMm_X85LBJyM | headtr1ck 43316012 | 2022-09-26T20:28:28Z | 2022-09-26T20:28:28Z | COLLABORATOR | Ok, I thought that copying attrs was fixed. Seems like it did not... I will create a PR to fix this first, then we can use your test :) |
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Dataset.copy(deep=True) does not deepcopy .attrs 423742774 | |
1258538050 | https://github.com/pydata/xarray/issues/2835#issuecomment-1258538050 | https://api.github.com/repos/pydata/xarray/issues/2835 | IC_kwDOAMm_X85LA8RC | phockett 4447466 | 2022-09-26T19:48:39Z | 2022-09-26T19:52:14Z | CONTRIBUTOR | OK, new test now pushed as #7086. (Hopefully added in the right place and style!) A couple of additional notes:
```python import xarray as xr ds = xr.Dataset({"a": (["x"], [1, 2, 3])}, attrs={"t": 1, "nested":{"t2": 1}}) ds.a.attrs = {"t": 'a1', "nested":{"t2": 'a1'}} ds2 = ds.copy(deep=True) ds.attrs["t"] = 5 ds.attrs["nested"]["t2"] = 10 ds2.a.attrs["t"] = 'a2' ds2.a.attrs["nested"]["t2"] = 'a2' print(ds.attrs) print(ds.a.attrs) print(ds2.attrs) print(ds2.a.attrs) ``` Results in: ``` {'t': 5, 'nested': {'t2': 10}} {'t': 'a1', 'nested': {'t2': 'a2'}} {'t': 1, 'nested': {'t2': 1}} {'t': 'a2', 'nested': {'t2': 'a2'}} ``` |
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Dataset.copy(deep=True) does not deepcopy .attrs 423742774 | |
1258235669 | https://github.com/pydata/xarray/issues/2835#issuecomment-1258235669 | https://api.github.com/repos/pydata/xarray/issues/2835 | IC_kwDOAMm_X85K_ycV | headtr1ck 43316012 | 2022-09-26T15:41:22Z | 2022-09-26T15:41:22Z | COLLABORATOR |
Great! Just ask if you need help :) Basically: fork repo, make new branch on your forked repo, add test, create PR (when you push GitHub should show a popup asking if you want to create a PR anyway). |
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Dataset.copy(deep=True) does not deepcopy .attrs 423742774 | |
1258231700 | https://github.com/pydata/xarray/issues/2835#issuecomment-1258231700 | https://api.github.com/repos/pydata/xarray/issues/2835 | IC_kwDOAMm_X85K_xeU | phockett 4447466 | 2022-09-26T15:38:18Z | 2022-09-26T15:38:18Z | CONTRIBUTOR | Absolutely @headtr1ck, glad that it was useful - I'm a bit green re: tests and PRs to large projects, but will make a stab at it. I'm just consulting the Contributing guide now. |
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Dataset.copy(deep=True) does not deepcopy .attrs 423742774 | |
1256569748 | https://github.com/pydata/xarray/issues/2835#issuecomment-1256569748 | https://api.github.com/repos/pydata/xarray/issues/2835 | IC_kwDOAMm_X85K5buU | headtr1ck 43316012 | 2022-09-23T18:59:33Z | 2022-09-23T18:59:33Z | COLLABORATOR | I see, so it was a problem of recursively copying the attrs. @phockett would you be open to add your example as a test in a PR such that we can avoid this in the future? |
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Dataset.copy(deep=True) does not deepcopy .attrs 423742774 | |
1236379727 | https://github.com/pydata/xarray/issues/2835#issuecomment-1236379727 | https://api.github.com/repos/pydata/xarray/issues/2835 | IC_kwDOAMm_X85JsahP | keewis 14808389 | 2022-09-04T17:01:05Z | 2022-09-04T17:01:05Z | MEMBER | even with
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Dataset.copy(deep=True) does not deepcopy .attrs 423742774 | |
1236356402 | https://github.com/pydata/xarray/issues/2835#issuecomment-1236356402 | https://api.github.com/repos/pydata/xarray/issues/2835 | IC_kwDOAMm_X85JsU0y | headtr1ck 43316012 | 2022-09-04T14:41:39Z | 2022-09-04T14:41:39Z | COLLABORATOR | Cannot reproduce on current master using ```python import xarray as xr ds = xr.Dataset({"a": (["x"], [1, 2, 3])}, attrs={"t": 1}) ds2 = ds.copy(deep=True) ds.attrs["t"] = 5 print(ds2.attrs) # returns: {'t': 1} ``` |
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Dataset.copy(deep=True) does not deepcopy .attrs 423742774 | |
1194130964 | https://github.com/pydata/xarray/issues/2835#issuecomment-1194130964 | https://api.github.com/repos/pydata/xarray/issues/2835 | IC_kwDOAMm_X85HLP4U | Ch-Meier 18261501 | 2022-07-25T14:33:32Z | 2022-07-25T14:33:54Z | NONE |
I am seeing the same issue as well. |
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Dataset.copy(deep=True) does not deepcopy .attrs 423742774 | |
1194129373 | https://github.com/pydata/xarray/issues/2835#issuecomment-1194129373 | https://api.github.com/repos/pydata/xarray/issues/2835 | IC_kwDOAMm_X85HLPfd | DerPlankton13 69301768 | 2022-07-25T14:32:18Z | 2022-07-25T14:32:18Z | NONE | Jumping from 2022.3.0 to 2022.6.0 this issue has re-emerged for me. |
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Dataset.copy(deep=True) does not deepcopy .attrs 423742774 | |
475263182 | https://github.com/pydata/xarray/issues/2835#issuecomment-475263182 | https://api.github.com/repos/pydata/xarray/issues/2835 | MDEyOklzc3VlQ29tbWVudDQ3NTI2MzE4Mg== | dcherian 2448579 | 2019-03-21T14:56:03Z | 2019-03-21T14:56:03Z | MEMBER | Thanks @kefirbandi, can you send in a PR? |
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Dataset.copy(deep=True) does not deepcopy .attrs 423742774 |
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