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- virtual variables not available when using open_dataset · 5 ✖
id | html_url | issue_url | node_id | user | created_at | updated_at ▲ | author_association | body | reactions | performed_via_github_app | issue |
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42893119 | https://github.com/pydata/xarray/issues/121#issuecomment-42893119 | https://api.github.com/repos/pydata/xarray/issues/121 | MDEyOklzc3VlQ29tbWVudDQyODkzMTE5 | shoyer 1217238 | 2014-05-12T21:51:14Z | 2014-05-12T21:51:33Z | MEMBER | Those precision issues are unfortunate but perhaps unavoidable in this case because you are representing dates as floating point numbers -- the units are in "days" but the frequency between time points is measured in "hours". |
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virtual variables not available when using open_dataset 33272937 | |
42890839 | https://github.com/pydata/xarray/issues/121#issuecomment-42890839 | https://api.github.com/repos/pydata/xarray/issues/121 | MDEyOklzc3VlQ29tbWVudDQyODkwODM5 | jhamman 2443309 | 2014-05-12T21:28:44Z | 2014-05-12T21:28:44Z | MEMBER | Ok, I just spent a few minutes working through a possible (although not ideal) solution for this. It works although it is a bit ugly and quite a bit slower than the standard calendar option. This option returns a ``` python In [1]: import pandas as pd from netCDF4 import num2date, date2num import datetime import numpy as np from xray.conventions import decode_cf_datetime as decode units = 'days since 0001-01-01' pandas time rangetimes = pd.date_range('2001-01-01-00', end='2001-06-30-23', freq='H') numpy array of numeric dates on noleap calendarnoleap_time = date2num(times.to_pydatetime(), units, calendar='noleap') numpy array of numeric dates on standard calendarstd_time = date2num(times.to_pydatetime(), units, calendar='standard') decoding function using datetime intermediarydef nctime_to_nptime(times): new = np.empty(len(times), dtype='M8[ns]') for i, t in enumerate(times): new[i] = np.datetime64(datetime.datetime(*t.timetuple()[:6])) return new In [2]: decode noleap_time%timeit nctime_to_nptime(decode(noleap_time, units, calendar='noleap')) noleap_datetimes = nctime_to_nptime(num2date(noleap_time, units, calendar='noleap')) print 'dtype:', noleap_datetimes.dtype print noleap_datetimes 10 loops, best of 3: 38.8 ms per loop dtype: datetime64[ns] ['2000-12-31T16:00:00.000000000-0800' '2000-12-31T17:00:00.000000000-0800' '2000-12-31T18:00:00.000000000-0800' ..., '2001-06-30T14:00:00.000000000-0700' '2001-06-30T15:00:00.000000000-0700' '2001-06-30T16:00:00.000000000-0700'] In [3]: decode std_time using vectorized converter%timeit decode(std_time, units, calendar='standard') standard_datetimes = decode(std_time, units, calendar='standard') print 'dtype:', standard_datetimes.dtype print standard_datetimes 1000 loops, best of 3: 243 µs per loop dtype: datetime64[ns] ['2000-12-31T16:00:00.000000000-0800' '2000-12-31T16:59:59.000000000-0800' '2000-12-31T17:59:59.000000000-0800' ..., '2001-06-30T13:59:59.000000000-0700' '2001-06-30T14:59:59.000000000-0700' '2001-06-30T15:59:59.000000000-0700'] ``` Two three things to notice here:
- the |
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virtual variables not available when using open_dataset 33272937 | |
42798808 | https://github.com/pydata/xarray/issues/121#issuecomment-42798808 | https://api.github.com/repos/pydata/xarray/issues/121 | MDEyOklzc3VlQ29tbWVudDQyNzk4ODA4 | shoyer 1217238 | 2014-05-12T06:09:09Z | 2014-05-12T06:09:21Z | MEMBER | Timedelta operations are used in exactly one place in xray: speeding up decoding of dates from netCDF if a standard calendar is being used. Otherwise, that sort of stuff is left up to the user. If dates with non-standard calendars can generally be most usefully expressed as a pandas.DatetimeIndex, then let's go ahead and default to decoding them into datetime64 arrays. The relevant function to modify is here (see also here) if you'd like to make a pull request! |
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virtual variables not available when using open_dataset 33272937 | |
42793512 | https://github.com/pydata/xarray/issues/121#issuecomment-42793512 | https://api.github.com/repos/pydata/xarray/issues/121 | MDEyOklzc3VlQ29tbWVudDQyNzkzNTEy | jhamman 2443309 | 2014-05-12T03:25:35Z | 2014-05-12T03:25:35Z | MEMBER | I think the simplest option would be to develop a function to cast the Does I've run into issues like this repeatedly and I think it would be really nice if the |
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virtual variables not available when using open_dataset 33272937 | |
42789906 | https://github.com/pydata/xarray/issues/121#issuecomment-42789906 | https://api.github.com/repos/pydata/xarray/issues/121 | MDEyOklzc3VlQ29tbWVudDQyNzg5OTA2 | shoyer 1217238 | 2014-05-12T01:31:11Z | 2014-05-12T01:31:11Z | MEMBER | Yes, this is certainly related to #118. Virtual variables work by using pandas.DatetimeIndex methods, but if you're not using a standard calendar, you end up with an object array of netCDF4.datetime objects instead of an array of numpy.datetime64 objects (which can be turned into a DatetimeIndex). Unfortunately, we do need to be able to make a DatetimeIndex to be able to use its (very quick) calculations for properties like year. The alternative is to write our own implementation, which would likely mean far slower pure-python code. We could also write a function to cast an array into a DatetimeIndex from datetime objects, which I'm guessing would be your preferred solution, even though there are issues like the difference between dates, as DatetimeIndex objects and numpy's datetime64 always assume a standard gregorian calendar. |
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virtual variables not available when using open_dataset 33272937 |
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