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  • lumbric · 1 ✖

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  • Memory leak while looping through a Dataset · 1 ✖

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id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
1046665303 https://github.com/pydata/xarray/issues/2186#issuecomment-1046665303 https://api.github.com/repos/pydata/xarray/issues/2186 IC_kwDOAMm_X84-YthX lumbric 691772 2022-02-21T09:41:00Z 2022-02-21T09:41:00Z CONTRIBUTOR

I just stumbled across the same issue and created a minimal example similar to @lkilcher. I am using xr.open_dataarray() with chunks and do some simple computation. After that 800mb of RAM is used, no matter whether I close the file explicitly, delete the xarray objects or invoke the Python garbage collector.

What seems to work: do not use the threading Dask scheduler. The issue does not seem to occur with the single-threaded or processes scheduler. Also setting MALLOC_MMAP_MAX_=40960 seems to solve the issue as suggested above (disclaimer: I don't fully understand the details here).

If I understand things correctly, this indicates that the issue is a consequence of dask/dask#3530. Not sure if there is anything to be fixed on the xarray side or what would be the best work around. I will try to use the processes scheduler.

I can create a new (xarray) ticket with all details about the minimal example, if anyone thinks that this might be helpful (to collect work-a-rounds or discuss fixes on the xarray side).

 
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   Memory leak while looping through a Dataset 326533369

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