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  • Local test failure in test_backends · 6 ✖
id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
687659490 https://github.com/pydata/xarray/issues/1923#issuecomment-687659490 https://api.github.com/repos/pydata/xarray/issues/1923 MDEyOklzc3VlQ29tbWVudDY4NzY1OTQ5MA== mathause 10194086 2020-09-05T20:32:17Z 2020-09-05T20:32:17Z MEMBER

Without really looking - I think this can be closed given that we test all but dask now: https://github.com/pydata/xarray/blob/master/ci/requirements/py38-all-but-dask.yml#L1 

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   Local test failure in test_backends 298421965
447413024 https://github.com/pydata/xarray/issues/1923#issuecomment-447413024 https://api.github.com/repos/pydata/xarray/issues/1923 MDEyOklzc3VlQ29tbWVudDQ0NzQxMzAyNA== dcherian 2448579 2018-12-14T18:30:31Z 2018-12-14T18:30:31Z MEMBER

Ooops I didn't see that #1927 was open. Sorry for the noise.

 
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   Local test failure in test_backends 298421965
447394726 https://github.com/pydata/xarray/issues/1923#issuecomment-447394726 https://api.github.com/repos/pydata/xarray/issues/1923 MDEyOklzc3VlQ29tbWVudDQ0NzM5NDcyNg== max-sixty 5635139 2018-12-14T17:28:39Z 2018-12-14T17:28:39Z MEMBER

I haven't tried in a while without dask - it's a very minor issue given that it only requires installing dask

 
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   Local test failure in test_backends 298421965
447393792 https://github.com/pydata/xarray/issues/1923#issuecomment-447393792 https://api.github.com/repos/pydata/xarray/issues/1923 MDEyOklzc3VlQ29tbWVudDQ0NzM5Mzc5Mg== dcherian 2448579 2018-12-14T17:25:24Z 2018-12-14T17:25:24Z MEMBER

@max-sixty Is this still an issue?

 
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   Local test failure in test_backends 298421965
388274448 https://github.com/pydata/xarray/issues/1923#issuecomment-388274448 https://api.github.com/repos/pydata/xarray/issues/1923 MDEyOklzc3VlQ29tbWVudDM4ODI3NDQ0OA== smithsp 782050 2018-05-11T06:35:30Z 2018-05-11T06:35:30Z NONE

I think that I am encountering this myself. Here is my (relevant) environment: ``` $ conda list dask

packages in environment at /fusion/projects/codes/conda/omfit:

Name Version Build Channel

dask 0.17.0 py_0 conda-forge dask-core 0.17.0 py_0 conda-forge $ conda list xarray

packages in environment at /fusion/projects/codes/conda/omfit:

Name Version Build Channel

xarray 0.10.3 py27_0 conda-forge $ conda list numpy

packages in environment at /fusion/projects/codes/conda/omfit:

Name Version Build Channel

numpy 1.12.1 py27_blas_openblas_201 [blas_openblas] conda-forge numpydoc 0.8.0 py27_0
Here is the error: File "/home/smithsp/OMFIT-source/src/omfit.py", line 30, in <module> main() File "/home/smithsp/OMFIT-source/src/omfit.py", line 25, in main OMFIT['userScript'].runNoGUI(_tmp) File "/home/smithsp/OMFIT-source/src/omfit_tree.py", line 1286, in runNoGUI return self.run(kw) File "/home/smithsp/OMFIT-source/src/omfit_tree.py", line 1271, in run result = self.run(kw) File "/home/smithsp/OMFIT-source/src/omfit_tree.py", line 1177, in run tmp=execGlobLoc(self, kw, _relLoc, {}, OMFITscriptsDict, prerun=_prerun, postrun=_postrun) File "/home/smithsp/OMFIT-source/src/omfit_tree.py", line 127, in f_locked return f(*args,kw) File "/home/smithsp/OMFIT-source/src/omfit_tree.py", line 279, in execGlobLoc exec(compile(exeString, filename, "exec"),GlobLoc) File "/home/smithsp/OMFIT-source/regression/test_dataset.py", line 138, in <module> pickle.dump(OMFIT['TS_ds'],f,pickle.HIGHEST_PROTOCOL) File "/home/smithsp/OMFIT-source/src/classes/sortedDict.py", line 1295, in _OMFITdump return pypickle.dump(x,args,kw) File "/fusion/projects/codes/conda/omfit/lib/python2.7/pickle.py", line 1376, in dump Pickler(file, protocol).dump(obj) File "/fusion/projects/codes/conda/omfit/lib/python2.7/pickle.py", line 224, in dump self.save(obj) File "/fusion/projects/codes/conda/omfit/lib/python2.7/pickle.py", line 331, in save self.save_reduce(obj=obj, rv) File "/fusion/projects/codes/conda/omfit/lib/python2.7/pickle.py", line 425, in save_reduce save(state) File "/fusion/projects/codes/conda/omfit/lib/python2.7/pickle.py", line 286, in save f(self, obj) # Call unbound method with explicit self File "/fusion/projects/codes/conda/omfit/lib/python2.7/pickle.py", line 655, in save_dict self._batch_setitems(obj.iteritems()) File "/fusion/projects/codes/conda/omfit/lib/python2.7/pickle.py", line 687, in _batch_setitems save(v) File "/fusion/projects/codes/conda/omfit/lib/python2.7/pickle.py", line 331, in save self.save_reduce(obj=obj, rv) File "/fusion/projects/codes/conda/omfit/lib/python2.7/pickle.py", line 425, in save_reduce save(state) File "/fusion/projects/codes/conda/omfit/lib/python2.7/pickle.py", line 286, in save f(self, obj) # Call unbound method with explicit self File "/fusion/projects/codes/conda/omfit/lib/python2.7/pickle.py", line 655, in save_dict self._batch_setitems(obj.iteritems()) File "/fusion/projects/codes/conda/omfit/lib/python2.7/pickle.py", line 687, in _batch_setitems save(v) File "/fusion/projects/codes/conda/omfit/lib/python2.7/pickle.py", line 331, in save self.save_reduce(obj=obj, rv) File "/fusion/projects/codes/conda/omfit/lib/python2.7/pickle.py", line 425, in save_reduce save(state) File "/fusion/projects/codes/conda/omfit/lib/python2.7/pickle.py", line 286, in save f(self, obj) # Call unbound method with explicit self File "/fusion/projects/codes/conda/omfit/lib/python2.7/pickle.py", line 655, in save_dict self._batch_setitems(obj.iteritems()) File "/fusion/projects/codes/conda/omfit/lib/python2.7/pickle.py", line 687, in _batch_setitems save(v) File "/fusion/projects/codes/conda/omfit/lib/python2.7/pickle.py", line 306, in save rv = reduce(self.proto) TypeError: can't pickle thread.lock objects ``` Let me know if you want a smaller code sample to test.

 
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   Local test failure in test_backends 298421965
366887494 https://github.com/pydata/xarray/issues/1923#issuecomment-366887494 https://api.github.com/repos/pydata/xarray/issues/1923 MDEyOklzc3VlQ29tbWVudDM2Njg4NzQ5NA== shoyer 1217238 2018-02-20T07:20:07Z 2018-02-20T07:20:07Z MEMBER

I think this test would pass if you had dask installed.

SciPy comes with read/write support for netCDF3, which is why this is being picked up.

 
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   Local test failure in test_backends 298421965

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