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  • Dimension Co-ordinates incorectly saving _FillValue attribute · 6 ✖
id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
361473220 https://github.com/pydata/xarray/issues/1865#issuecomment-361473220 https://api.github.com/repos/pydata/xarray/issues/1865 MDEyOklzc3VlQ29tbWVudDM2MTQ3MzIyMA== czr137 6153603 2018-01-30T04:23:26Z 2018-01-30T04:23:26Z CONTRIBUTOR

@shoyer, I'll look at the documentation once this is resolved and make a PR.

 
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   Dimension Co-ordinates incorectly saving _FillValue attribute 292585285
361473052 https://github.com/pydata/xarray/issues/1865#issuecomment-361473052 https://api.github.com/repos/pydata/xarray/issues/1865 MDEyOklzc3VlQ29tbWVudDM2MTQ3MzA1Mg== czr137 6153603 2018-01-30T04:22:19Z 2018-01-30T04:22:19Z CONTRIBUTOR

My apologies for having to re-open the issue, I should have tried the fix before closing.

I get the following error after changing my last line to: ds.to_netcdf('/tmp/test.nc', encoding={'lat': {'_FillValue': None}, 'lon': {'_FillValue': None}}) as suggested.

File "/path/to/python3.6/site-packages/xarray/backends/netCDF4_.py", line 354, in prepare_variable unlimited_dims=unlimited_dims) File "/path/to/python3.6/site-packages/xarray/backends/netCDF4_.py", line 176, in _extract_nc4_variable_encoding ' %r' % (backend, invalid)) ValueError: unexpected encoding parameters for 'netCDF4' backend: ['_FillValue'] Do we just need to append '_FillValue' to the list of ` valid_encodings = set(['zlib', 'complevel', 'fletcher32', 'contiguous', 'chunksizes', 'shuffle'])

 
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   Dimension Co-ordinates incorectly saving _FillValue attribute 292585285
361471544 https://github.com/pydata/xarray/issues/1865#issuecomment-361471544 https://api.github.com/repos/pydata/xarray/issues/1865 MDEyOklzc3VlQ29tbWVudDM2MTQ3MTU0NA== shoyer 1217238 2018-01-30T04:10:53Z 2018-01-30T04:10:53Z MEMBER

If you have ideas for improving this further (even documentation), please do speak up.

 
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   Dimension Co-ordinates incorectly saving _FillValue attribute 292585285
361470288 https://github.com/pydata/xarray/issues/1865#issuecomment-361470288 https://api.github.com/repos/pydata/xarray/issues/1865 MDEyOklzc3VlQ29tbWVudDM2MTQ3MDI4OA== czr137 6153603 2018-01-30T04:01:23Z 2018-01-30T04:01:23Z CONTRIBUTOR

Thanks.

 
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   Dimension Co-ordinates incorectly saving _FillValue attribute 292585285
361464704 https://github.com/pydata/xarray/issues/1865#issuecomment-361464704 https://api.github.com/repos/pydata/xarray/issues/1865 MDEyOklzc3VlQ29tbWVudDM2MTQ2NDcwNA== shoyer 1217238 2018-01-30T03:21:34Z 2018-01-30T03:21:34Z MEMBER

Please take a look at the discussion in https://github.com/pydata/xarray/issues/1598.

You can use ds.to_netcdf('/tmp/test.nc', encoding={'lat': {'_FillValue': None}, 'lon': {'_FillValue': None}}) to disable this. 

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   Dimension Co-ordinates incorectly saving _FillValue attribute 292585285
361410274 https://github.com/pydata/xarray/issues/1865#issuecomment-361410274 https://api.github.com/repos/pydata/xarray/issues/1865 MDEyOklzc3VlQ29tbWVudDM2MTQxMDI3NA== czr137 6153603 2018-01-29T22:33:47Z 2018-01-29T22:33:47Z CONTRIBUTOR

Please add the label "CF conventions" to this issue

 
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   Dimension Co-ordinates incorectly saving _FillValue attribute 292585285

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