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  • Resolve warnings issued in the xarray test suite · 10 ✖
id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
782945342 https://github.com/pydata/xarray/issues/1652#issuecomment-782945342 https://api.github.com/repos/pydata/xarray/issues/1652 MDEyOklzc3VlQ29tbWVudDc4Mjk0NTM0Mg== keewis 14808389 2021-02-21T23:06:34Z 2021-02-21T23:06:34Z MEMBER

closing in favor of #3266

 
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   Resolve warnings issued in the xarray test suite 267927402
579476567 https://github.com/pydata/xarray/issues/1652#issuecomment-579476567 https://api.github.com/repos/pydata/xarray/issues/1652 MDEyOklzc3VlQ29tbWVudDU3OTQ3NjU2Nw== keewis 14808389 2020-01-28T21:56:54Z 2020-01-28T21:56:54Z MEMBER

this may be related to (or superseded by) #3266

 
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   Resolve warnings issued in the xarray test suite 267927402
579422126 https://github.com/pydata/xarray/issues/1652#issuecomment-579422126 https://api.github.com/repos/pydata/xarray/issues/1652 MDEyOklzc3VlQ29tbWVudDU3OTQyMjEyNg== stale[bot] 26384082 2020-01-28T19:45:38Z 2020-01-28T19:45:38Z NONE

In order to maintain a list of currently relevant issues, we mark issues as stale after a period of inactivity

If this issue remains relevant, please comment here or remove the stale label; otherwise it will be marked as closed automatically

 
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   Resolve warnings issued in the xarray test suite 267927402
366825589 https://github.com/pydata/xarray/issues/1652#issuecomment-366825589 https://api.github.com/repos/pydata/xarray/issues/1652 MDEyOklzc3VlQ29tbWVudDM2NjgyNTU4OQ== max-sixty 5635139 2018-02-19T23:22:48Z 2018-02-27T19:34:16Z MEMBER

Here's the latest output (excluding test_backends.py, which separately isn't working locally):

EDIT: put this into a details dropdown

``` ====================================================================== warnings summary ====================================================================== xarray/tests/test_dataarray.py::TestDataArray::test_groupby_math /Users/maximilian/drive/workspace/xarray/xarray/tests/test_dataarray.py:2019: FutureWarning: the order of the arguments on DataArray.to_dataset has changed; you now need to supply ``name`` as a keyword argument ds = array.coords['x'].to_dataset('X') xarray/tests/test_dataarray.py::TestDataArray::test_reindex_regressions /Users/maximilian/drive/workspace/xarray/xarray/core/dataarray.py:889: FutureWarning: Indexer has dimensions ('time2',) that are different from that to be indexed along time. This will behave differently in the future. method=method, tolerance=tolerance, copy=copy, **indexers) xarray/tests/test_dataarray.py::test_rolling_reduce[mean-1-None-True-2] /Users/maximilian/drive/workspace/xarray/xarray/core/variable.py:1224: RuntimeWarning: Mean of empty slice axis=axis, **kwargs) xarray/tests/test_dataarray.py::test_rolling_reduce[mean-1-None-False-2] /Users/maximilian/drive/workspace/xarray/xarray/core/variable.py:1224: RuntimeWarning: Mean of empty slice axis=axis, **kwargs) xarray/tests/test_dataarray.py::test_rolling_reduce[mean-1-1-True-2] /Users/maximilian/drive/workspace/xarray/xarray/core/variable.py:1224: RuntimeWarning: Mean of empty slice axis=axis, **kwargs) xarray/tests/test_dataarray.py::test_rolling_reduce[mean-1-1-False-2] /Users/maximilian/drive/workspace/xarray/xarray/core/variable.py:1224: RuntimeWarning: Mean of empty slice axis=axis, **kwargs) xarray/tests/test_dataarray.py::test_rolling_reduce[mean-1-2-True-2] /Users/maximilian/drive/workspace/xarray/xarray/core/variable.py:1224: RuntimeWarning: Mean of empty slice axis=axis, **kwargs) xarray/tests/test_dataarray.py::test_rolling_reduce[mean-1-2-False-2] /Users/maximilian/drive/workspace/xarray/xarray/core/variable.py:1224: RuntimeWarning: Mean of empty slice axis=axis, **kwargs) xarray/tests/test_dataarray.py::test_rolling_reduce[mean-1-3-True-2] /Users/maximilian/drive/workspace/xarray/xarray/core/variable.py:1224: RuntimeWarning: Mean of empty slice axis=axis, **kwargs) xarray/tests/test_dataarray.py::test_rolling_reduce[mean-1-3-False-2] /Users/maximilian/drive/workspace/xarray/xarray/core/variable.py:1224: RuntimeWarning: Mean of empty slice axis=axis, **kwargs) xarray/tests/test_dataarray.py::test_rolling_reduce[std-1-None-True-2] /usr/local/lib/python3.6/site-packages/numpy/lib/nanfunctions.py:1434: RuntimeWarning: Degrees of freedom <= 0 for slice. keepdims=keepdims) xarray/tests/test_dataarray.py::test_rolling_reduce[std-1-None-False-2] /usr/local/lib/python3.6/site-packages/numpy/lib/nanfunctions.py:1434: RuntimeWarning: Degrees of freedom <= 0 for slice. keepdims=keepdims) xarray/tests/test_dataarray.py::test_rolling_reduce[std-1-1-True-2] /usr/local/lib/python3.6/site-packages/numpy/lib/nanfunctions.py:1434: RuntimeWarning: Degrees of freedom <= 0 for slice. keepdims=keepdims) xarray/tests/test_dataarray.py::test_rolling_reduce[std-1-1-False-2] /usr/local/lib/python3.6/site-packages/numpy/lib/nanfunctions.py:1434: RuntimeWarning: Degrees of freedom <= 0 for slice. keepdims=keepdims) xarray/tests/test_dataarray.py::test_rolling_reduce[std-1-2-True-2] /usr/local/lib/python3.6/site-packages/numpy/lib/nanfunctions.py:1434: RuntimeWarning: Degrees of freedom <= 0 for slice. keepdims=keepdims) xarray/tests/test_dataarray.py::test_rolling_reduce[std-1-2-False-2] /usr/local/lib/python3.6/site-packages/numpy/lib/nanfunctions.py:1434: RuntimeWarning: Degrees of freedom <= 0 for slice. keepdims=keepdims) xarray/tests/test_dataarray.py::test_rolling_reduce[std-1-3-True-2] /usr/local/lib/python3.6/site-packages/numpy/lib/nanfunctions.py:1434: RuntimeWarning: Degrees of freedom <= 0 for slice. keepdims=keepdims) xarray/tests/test_dataarray.py::test_rolling_reduce[std-1-3-False-2] /usr/local/lib/python3.6/site-packages/numpy/lib/nanfunctions.py:1434: RuntimeWarning: Degrees of freedom <= 0 for slice. keepdims=keepdims) xarray/tests/test_dataarray.py::test_rolling_reduce[max-1-None-True-2] /Users/maximilian/drive/workspace/xarray/xarray/core/variable.py:1224: RuntimeWarning: All-NaN slice encountered axis=axis, **kwargs) xarray/tests/test_dataarray.py::test_rolling_reduce[max-1-None-False-2] /Users/maximilian/drive/workspace/xarray/xarray/core/variable.py:1224: RuntimeWarning: All-NaN slice encountered axis=axis, **kwargs) xarray/tests/test_dataarray.py::test_rolling_reduce[max-1-1-True-2] /Users/maximilian/drive/workspace/xarray/xarray/core/variable.py:1224: RuntimeWarning: All-NaN slice encountered axis=axis, **kwargs) xarray/tests/test_dataarray.py::test_rolling_reduce[max-1-1-False-2] /Users/maximilian/drive/workspace/xarray/xarray/core/variable.py:1224: RuntimeWarning: All-NaN slice encountered axis=axis, **kwargs) xarray/tests/test_dataarray.py::test_rolling_reduce[max-1-2-True-2] /Users/maximilian/drive/workspace/xarray/xarray/core/variable.py:1224: RuntimeWarning: All-NaN slice encountered axis=axis, **kwargs) xarray/tests/test_dataarray.py::test_rolling_reduce[max-1-2-False-2] /Users/maximilian/drive/workspace/xarray/xarray/core/variable.py:1224: RuntimeWarning: All-NaN slice encountered axis=axis, **kwargs) xarray/tests/test_dataarray.py::test_rolling_reduce[max-1-3-True-2] /Users/maximilian/drive/workspace/xarray/xarray/core/variable.py:1224: RuntimeWarning: All-NaN slice encountered axis=axis, **kwargs) xarray/tests/test_dataarray.py::test_rolling_reduce[max-1-3-False-2] /Users/maximilian/drive/workspace/xarray/xarray/core/variable.py:1224: RuntimeWarning: All-NaN slice encountered axis=axis, **kwargs) xarray/tests/test_duck_array_ops.py::test_reduce[None-False-min-False-float-1] /usr/local/lib/python3.6/site-packages/numpy/core/_methods.py:29: RuntimeWarning: invalid value encountered in reduce return umr_minimum(a, axis, None, out, keepdims) xarray/tests/test_duck_array_ops.py::test_reduce[None-False-min-False-float-2] /usr/local/lib/python3.6/site-packages/numpy/core/_methods.py:29: RuntimeWarning: invalid value encountered in reduce return umr_minimum(a, axis, None, out, keepdims) xarray/tests/test_duck_array_ops.py::test_reduce[None-False-min-False-int-1] /usr/local/lib/python3.6/site-packages/numpy/core/_methods.py:29: RuntimeWarning: invalid value encountered in reduce return umr_minimum(a, axis, None, out, keepdims) xarray/tests/test_duck_array_ops.py::test_reduce[None-False-min-False-int-2] /usr/local/lib/python3.6/site-packages/numpy/core/_methods.py:29: RuntimeWarning: invalid value encountered in reduce return umr_minimum(a, axis, None, out, keepdims) xarray/tests/test_duck_array_ops.py::test_reduce[None-False-min-False-float32-1] /usr/local/lib/python3.6/site-packages/numpy/core/_methods.py:29: RuntimeWarning: invalid value encountered in reduce return umr_minimum(a, axis, None, out, keepdims) xarray/tests/test_duck_array_ops.py::test_reduce[None-False-min-False-float32-2] /usr/local/lib/python3.6/site-packages/numpy/core/_methods.py:29: RuntimeWarning: invalid value encountered in reduce return umr_minimum(a, axis, None, out, keepdims) xarray/tests/test_duck_array_ops.py::test_reduce[None-False-min-False-bool_-1] /usr/local/lib/python3.6/site-packages/numpy/core/_methods.py:29: RuntimeWarning: invalid value encountered in reduce return umr_minimum(a, axis, None, out, keepdims) xarray/tests/test_duck_array_ops.py::test_reduce[None-False-min-False-bool_-2] /usr/local/lib/python3.6/site-packages/numpy/core/_methods.py:29: RuntimeWarning: invalid value encountered in reduce return umr_minimum(a, axis, None, out, keepdims) xarray/tests/test_duck_array_ops.py::test_reduce[None-False-max-False-float-1] /usr/local/lib/python3.6/site-packages/numpy/core/_methods.py:26: RuntimeWarning: invalid value encountered in reduce return umr_maximum(a, axis, None, out, keepdims) xarray/tests/test_duck_array_ops.py::test_reduce[None-False-max-False-float-2] /usr/local/lib/python3.6/site-packages/numpy/core/_methods.py:26: RuntimeWarning: invalid value encountered in reduce return umr_maximum(a, axis, None, out, keepdims) xarray/tests/test_duck_array_ops.py::test_reduce[None-False-max-False-int-1] /usr/local/lib/python3.6/site-packages/numpy/core/_methods.py:26: RuntimeWarning: invalid value encountered in reduce return umr_maximum(a, axis, None, out, keepdims) xarray/tests/test_duck_array_ops.py::test_reduce[None-False-max-False-int-2] /usr/local/lib/python3.6/site-packages/numpy/core/_methods.py:26: RuntimeWarning: invalid value encountered in reduce return umr_maximum(a, axis, None, out, keepdims) xarray/tests/test_duck_array_ops.py::test_reduce[None-False-max-False-float32-1] /usr/local/lib/python3.6/site-packages/numpy/core/_methods.py:26: RuntimeWarning: invalid value encountered in reduce return umr_maximum(a, axis, None, out, keepdims) xarray/tests/test_duck_array_ops.py::test_reduce[None-False-max-False-float32-2] /usr/local/lib/python3.6/site-packages/numpy/core/_methods.py:26: RuntimeWarning: invalid value encountered in reduce return umr_maximum(a, axis, None, out, keepdims) xarray/tests/test_duck_array_ops.py::test_reduce[None-False-max-False-bool_-1] /usr/local/lib/python3.6/site-packages/numpy/core/_methods.py:26: RuntimeWarning: invalid value encountered in reduce return umr_maximum(a, axis, None, out, keepdims) xarray/tests/test_duck_array_ops.py::test_reduce[None-False-max-False-bool_-2] /usr/local/lib/python3.6/site-packages/numpy/core/_methods.py:26: RuntimeWarning: invalid value encountered in reduce return umr_maximum(a, axis, None, out, keepdims) xarray/tests/test_duck_array_ops.py::test_reduce[x-False-min-False-float-1] /usr/local/lib/python3.6/site-packages/numpy/core/_methods.py:29: RuntimeWarning: invalid value encountered in reduce return umr_minimum(a, axis, None, out, keepdims) xarray/tests/test_duck_array_ops.py::test_reduce[x-False-min-False-int-1] /usr/local/lib/python3.6/site-packages/numpy/core/_methods.py:29: RuntimeWarning: invalid value encountered in reduce return umr_minimum(a, axis, None, out, keepdims) xarray/tests/test_duck_array_ops.py::test_reduce[x-False-min-False-float32-1] /usr/local/lib/python3.6/site-packages/numpy/core/_methods.py:29: RuntimeWarning: invalid value encountered in reduce return umr_minimum(a, axis, None, out, keepdims) xarray/tests/test_duck_array_ops.py::test_reduce[x-False-min-False-bool_-1] /usr/local/lib/python3.6/site-packages/numpy/core/_methods.py:29: RuntimeWarning: invalid value encountered in reduce return umr_minimum(a, axis, None, out, keepdims) xarray/tests/test_duck_array_ops.py::test_reduce[x-False-max-False-float-1] /usr/local/lib/python3.6/site-packages/numpy/core/_methods.py:26: RuntimeWarning: invalid value encountered in reduce return umr_maximum(a, axis, None, out, keepdims) xarray/tests/test_duck_array_ops.py::test_reduce[x-False-max-False-int-1] /usr/local/lib/python3.6/site-packages/numpy/core/_methods.py:26: RuntimeWarning: invalid value encountered in reduce return umr_maximum(a, axis, None, out, keepdims) xarray/tests/test_duck_array_ops.py::test_reduce[x-False-max-False-float32-1] /usr/local/lib/python3.6/site-packages/numpy/core/_methods.py:26: RuntimeWarning: invalid value encountered in reduce return umr_maximum(a, axis, None, out, keepdims) xarray/tests/test_duck_array_ops.py::test_reduce[x-False-max-False-bool_-1] /usr/local/lib/python3.6/site-packages/numpy/core/_methods.py:26: RuntimeWarning: invalid value encountered in reduce return umr_maximum(a, axis, None, out, keepdims) xarray/tests/test_missing.py::test_scipy_methods_function /usr/local/lib/python3.6/site-packages/scipy/interpolate/polyint.py:511: RuntimeWarning: overflow encountered in multiply self.wi[:j] *= (self.xi[j]-self.xi[:j]) /usr/local/lib/python3.6/site-packages/scipy/interpolate/polyint.py:512: RuntimeWarning: overflow encountered in reduce self.wi[j] = np.multiply.reduce(self.xi[:j]-self.xi[j]) /usr/local/lib/python3.6/site-packages/scipy/interpolate/polyint.py:609: RuntimeWarning: invalid value encountered in true_divide p = np.dot(c,self.yi)/np.sum(c,axis=-1)[...,np.newaxis] /usr/local/lib/python3.6/site-packages/scipy/interpolate/polyint.py:324: RuntimeWarning: overflow encountered in multiply pi = w*pi /usr/local/lib/python3.6/site-packages/scipy/interpolate/polyint.py:325: RuntimeWarning: invalid value encountered in multiply p += pi[:,np.newaxis] * self.c[k] /usr/local/lib/python3.6/site-packages/scipy/interpolate/polyint.py:325: RuntimeWarning: invalid value encountered in add p += pi[:,np.newaxis] * self.c[k] xarray/tests/test_plot.py::TestContourf::test_can_plot_all_nans /usr/local/lib/python3.6/site-packages/matplotlib/contour.py:1534: UserWarning: Warning: converting a masked element to nan. self.zmax = float(z.max()) /usr/local/lib/python3.6/site-packages/matplotlib/contour.py:1535: UserWarning: Warning: converting a masked element to nan. self.zmin = float(z.min()) xarray/tests/test_plot.py::TestContour::test_can_plot_all_nans /usr/local/lib/python3.6/site-packages/matplotlib/contour.py:1534: UserWarning: Warning: converting a masked element to nan. self.zmax = float(z.max()) /usr/local/lib/python3.6/site-packages/matplotlib/contour.py:1535: UserWarning: Warning: converting a masked element to nan. self.zmin = float(z.min()) /usr/local/lib/python3.6/site-packages/matplotlib/contour.py:1176: RuntimeWarning: invalid value encountered in greater inside = (self.levels > self.zmin) & (self.levels < self.zmax) /usr/local/lib/python3.6/site-packages/matplotlib/contour.py:1176: RuntimeWarning: invalid value encountered in less inside = (self.levels > self.zmin) & (self.levels < self.zmax) /usr/local/lib/python3.6/site-packages/matplotlib/contour.py:1180: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" xarray/tests/test_plot.py::TestContour::test_single_level /usr/local/lib/python3.6/site-packages/matplotlib/contour.py:1180: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" xarray/tests/test_plot.py::TestPcolormesh::test_can_plot_axis_size_one /usr/local/lib/python3.6/site-packages/matplotlib/axes/_base.py:2961: UserWarning: Attempting to set identical left==right results in singular transformations; automatically expanding. left=0.0, right=0.0 'left=%s, right=%s') % (left, right)) /usr/local/lib/python3.6/site-packages/matplotlib/axes/_base.py:3285: UserWarning: Attempting to set identical bottom==top results in singular transformations; automatically expanding. bottom=0.0, top=0.0 'bottom=%s, top=%s') % (bottom, top)) xarray/tests/test_variable.py::TestVariable::test_index_0d_not_a_time /Users/maximilian/drive/workspace/xarray/xarray/core/duck_array_ops.py:138: FutureWarning: In the future, 'NAT == x' and 'x == NAT' will always be False. flag_array = (arr1 == arr2) /Users/maximilian/drive/workspace/xarray/xarray/tests/test_variable.py:144: FutureWarning: In the future, 'NAT == x' and 'x == NAT' will always be False. assert variable.values[0] == expected_value0 /Users/maximilian/drive/workspace/xarray/xarray/tests/test_variable.py:145: FutureWarning: In the future, 'NAT == x' and 'x == NAT' will always be False. assert variable[0].values == expected_value0 xarray/tests/test_variable.py::TestIndexVariable::test_index_0d_not_a_time /Users/maximilian/drive/workspace/xarray/xarray/tests/test_variable.py:144: FutureWarning: In the future, 'NAT == x' and 'x == NAT' will always be False. assert variable.values[0] == expected_value0 /Users/maximilian/drive/workspace/xarray/xarray/tests/test_variable.py:145: FutureWarning: In the future, 'NAT == x' and 'x == NAT' will always be False. assert variable[0].values == expected_value0 -- Docs: http://doc.pytest.org/en/latest/warnings.html ============================================= 2475 passed, 205 skipped, 4 xfailed, 71 warnings in 127.39 seconds ============================================= ``` 
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   Resolve warnings issued in the xarray test suite 267927402
340346833 https://github.com/pydata/xarray/issues/1652#issuecomment-340346833 https://api.github.com/repos/pydata/xarray/issues/1652 MDEyOklzc3VlQ29tbWVudDM0MDM0NjgzMw== jhamman 2443309 2017-10-30T05:23:52Z 2017-10-30T05:23:52Z MEMBER

reopening since #1657 only took care of a subset of the current warnings.

 
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   Resolve warnings issued in the xarray test suite 267927402
339209050 https://github.com/pydata/xarray/issues/1652#issuecomment-339209050 https://api.github.com/repos/pydata/xarray/issues/1652 MDEyOklzc3VlQ29tbWVudDMzOTIwOTA1MA== jhamman 2443309 2017-10-25T04:13:13Z 2017-10-25T04:13:13Z MEMBER

I'll take this one on unless someone else really wants it.

 
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   Resolve warnings issued in the xarray test suite 267927402
339199651 https://github.com/pydata/xarray/issues/1652#issuecomment-339199651 https://api.github.com/repos/pydata/xarray/issues/1652 MDEyOklzc3VlQ29tbWVudDMzOTE5OTY1MQ== jhamman 2443309 2017-10-25T03:03:07Z 2017-10-25T03:03:07Z MEMBER

$ py.test -W error xarray/tests ===== 372 failed, 2141 passed, 89 skipped, 10 xfailed in 148.41 seconds =====

👍 on squashing as many of these as possible.

 
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   Resolve warnings issued in the xarray test suite 267927402
338910015 https://github.com/pydata/xarray/issues/1652#issuecomment-338910015 https://api.github.com/repos/pydata/xarray/issues/1652 MDEyOklzc3VlQ29tbWVudDMzODkxMDAxNQ== fmaussion 10050469 2017-10-24T08:11:32Z 2017-10-24T08:11:32Z MEMBER

pandas doesn't show it.

Right, I misunderstood that part.

 
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   Resolve warnings issued in the xarray test suite 267927402
338905225 https://github.com/pydata/xarray/issues/1652#issuecomment-338905225 https://api.github.com/repos/pydata/xarray/issues/1652 MDEyOklzc3VlQ29tbWVudDMzODkwNTIyNQ== shoyer 1217238 2017-10-24T07:51:54Z 2017-10-24T07:51:54Z MEMBER

Do I understand right that you'd like to silence the warnings in the xr.DataArray([1, 2, np.NaN]) > 0 case?

Yes, I don't think this warning is very useful -- pandas doesn't show it.

 
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   Resolve warnings issued in the xarray test suite 267927402
338903435 https://github.com/pydata/xarray/issues/1652#issuecomment-338903435 https://api.github.com/repos/pydata/xarray/issues/1652 MDEyOklzc3VlQ29tbWVudDMzODkwMzQzNQ== fmaussion 10050469 2017-10-24T07:44:30Z 2017-10-24T07:44:30Z MEMBER

Do I understand right that you'd like to silence the warnings in the xr.DataArray([1, 2, np.NaN]) > 0 case?

 
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   Resolve warnings issued in the xarray test suite 267927402

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   [issue] INTEGER REFERENCES [issues]([id])
);
CREATE INDEX [idx_issue_comments_issue]
    ON [issue_comments] ([issue]);
CREATE INDEX [idx_issue_comments_user]
    ON [issue_comments] ([user]);