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  • Save arbitrary Python objects to netCDF · 5 ✖
id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
485217940 https://github.com/pydata/xarray/issues/1415#issuecomment-485217940 https://api.github.com/repos/pydata/xarray/issues/1415 MDEyOklzc3VlQ29tbWVudDQ4NTIxNzk0MA== stale[bot] 26384082 2019-04-21T02:04:01Z 2019-04-21T02:04:01Z NONE

In order to maintain a list of currently relevant issues, we mark issues as stale after a period of inactivity

If this issue remains relevant, please comment here or remove the stale label; otherwise it will be marked as closed automatically

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  Save arbitrary Python objects to netCDF 230158616
302909333 https://github.com/pydata/xarray/issues/1415#issuecomment-302909333 https://api.github.com/repos/pydata/xarray/issues/1415 MDEyOklzc3VlQ29tbWVudDMwMjkwOTMzMw== lewisacidic 2941720 2017-05-21T01:36:06Z 2017-05-21T01:36:06Z CONTRIBUTOR

Yeah, looking at it, it's probably not a thing for them. I thought something like:

```python

implement something like

strs = nc.createVariable('strs', str, ('strs_dim',))

objs = nc.createVariable('objs', object, ('objs_dim',)) ```

But I see that the str datatype is a netCDF spec type.

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  Save arbitrary Python objects to netCDF 230158616
302897807 https://github.com/pydata/xarray/issues/1415#issuecomment-302897807 https://api.github.com/repos/pydata/xarray/issues/1415 MDEyOklzc3VlQ29tbWVudDMwMjg5NzgwNw== shoyer 1217238 2017-05-20T20:46:55Z 2017-05-20T20:46:55Z MEMBER

Sure, there's no harm in asking. My guess is that this isn't a good fit, but I'm not entirely sure.

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  Save arbitrary Python objects to netCDF 230158616
302896115 https://github.com/pydata/xarray/issues/1415#issuecomment-302896115 https://api.github.com/repos/pydata/xarray/issues/1415 MDEyOklzc3VlQ29tbWVudDMwMjg5NjExNQ== lewisacidic 2941720 2017-05-20T20:15:39Z 2017-05-20T20:15:39Z CONTRIBUTOR

I would certainly be interested in giving this a try, although I'm not exactly sure what would go where yet. It seems like this might possibly be something that would be more appropriate in the netCDF4-python library - should I start an issue over there?

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  Save arbitrary Python objects to netCDF 230158616
302879988 https://github.com/pydata/xarray/issues/1415#issuecomment-302879988 https://api.github.com/repos/pydata/xarray/issues/1415 MDEyOklzc3VlQ29tbWVudDMwMjg3OTk4OA== shoyer 1217238 2017-05-20T15:28:55Z 2017-05-20T15:28:55Z MEMBER

I would be OK with this if it required explicitly setting a keyword argument, e.g., ds.to_netcdf(..., allow_pickle=True) and xarray.open_dataset(..., allow_pickle=True). This could be hooked into xarray's existing coding/decoding layer in a relatively straightforward fashion: see ensure_dtype_not_object for where this is caught in the current code. (We would also need something at a lower level in the netCDF4 specific reader/writer to handle uint8 VLType.)

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  Save arbitrary Python objects to netCDF 230158616

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