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301153738 https://github.com/pydata/xarray/pull/1389#issuecomment-301153738 https://api.github.com/repos/pydata/xarray/issues/1389 MDEyOklzc3VlQ29tbWVudDMwMTE1MzczOA== shoyer 1217238 2017-05-12T18:36:30Z 2017-05-12T18:36:30Z MEMBER

BTW, I think I messed up my co-worker's name in whats-new.rst. The spelling is right (Kyle Heuton), but the extra indentation shouldn't be there. As a result his name appears a bit out of place. Would be very much obliged if you could fix that in your next push to master. Gracias.

No worries, whats-new.rst usually requires a fix-up before each release

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301135310 https://github.com/pydata/xarray/pull/1389#issuecomment-301135310 https://api.github.com/repos/pydata/xarray/issues/1389 MDEyOklzc3VlQ29tbWVudDMwMTEzNTMxMA== chunweiyuan 5572303 2017-05-12T17:18:49Z 2017-05-12T17:18:49Z CONTRIBUTOR

Thank you very much for your patience!

BTW, I think I messed up my co-worker's name in whats-new.rst. The spelling is right (Kyle Heuton), but the extra indentation shouldn't be there. As a result his name appears a bit out of place. Would be very much obliged if you could fix that in your next push to master. Gracias.

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300951935 https://github.com/pydata/xarray/pull/1389#issuecomment-300951935 https://api.github.com/repos/pydata/xarray/issues/1389 MDEyOklzc3VlQ29tbWVudDMwMDk1MTkzNQ== shoyer 1217238 2017-05-12T00:29:42Z 2017-05-12T00:29:42Z MEMBER

api.rst should've been a checklist item :)

Indeed, I will add it right now!

Thanks for your contribution!!

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300947995 https://github.com/pydata/xarray/pull/1389#issuecomment-300947995 https://api.github.com/repos/pydata/xarray/issues/1389 MDEyOklzc3VlQ29tbWVudDMwMDk0Nzk5NQ== chunweiyuan 5572303 2017-05-11T23:59:29Z 2017-05-11T23:59:29Z CONTRIBUTOR

api.rst should've been a checklist item :)

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300852820 https://github.com/pydata/xarray/pull/1389#issuecomment-300852820 https://api.github.com/repos/pydata/xarray/issues/1389 MDEyOklzc3VlQ29tbWVudDMwMDg1MjgyMA== shoyer 1217238 2017-05-11T17:01:30Z 2017-05-11T17:01:30Z MEMBER

One last thing -- this needs an entry in docs/api.rst in order for the doc page to get built.

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300850103 https://github.com/pydata/xarray/pull/1389#issuecomment-300850103 https://api.github.com/repos/pydata/xarray/issues/1389 MDEyOklzc3VlQ29tbWVudDMwMDg1MDEwMw== chunweiyuan 5572303 2017-05-11T16:51:34Z 2017-05-11T16:51:34Z CONTRIBUTOR

If that's the case then I have nothing more to add. I've run flake8 on the individual files I touched I as well, such as flake8 xarray/core/dataset.py, and none of my changes are flagged.

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300680230 https://github.com/pydata/xarray/pull/1389#issuecomment-300680230 https://api.github.com/repos/pydata/xarray/issues/1389 MDEyOklzc3VlQ29tbWVudDMwMDY4MDIzMA== shoyer 1217238 2017-05-11T04:38:19Z 2017-05-11T04:38:19Z MEMBER

It's very strange that fake8 complains about non-Python files. I think you can safely ignore those. On Wed, May 10, 2017 at 8:55 PM chunweiyuan notifications@github.com wrote:

git diff upstream/master | flake8 --diff only complains about a bunch of lines in whats-new.rst and reshaping.rst. But these complaints don't make any sense to me. Some examples:

doc/reshaping.rst:195:1: E112 expected an indented block doc/reshaping.rst:203:1: E101 indentation contains mixed spaces and tabs doc/reshaping.rst:203:1: W191 indentation contains tabs doc/reshaping.rst:203:2: E113 unexpected indentation

I've played around with it a bit but not seen any changes to the complaints. What is going on? Should I even worry about the .rst files?

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/pydata/xarray/pull/1389#issuecomment-300675689, or mute the thread https://github.com/notifications/unsubscribe-auth/ABKS1qjB4dK0tHLBMrX6sURnlt_T5QX0ks5r4obPgaJpZM4NMGMU .

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300675689 https://github.com/pydata/xarray/pull/1389#issuecomment-300675689 https://api.github.com/repos/pydata/xarray/issues/1389 MDEyOklzc3VlQ29tbWVudDMwMDY3NTY4OQ== chunweiyuan 5572303 2017-05-11T03:55:58Z 2017-05-11T03:55:58Z CONTRIBUTOR

git diff upstream/master | flake8 --diff only complains about a bunch of lines in whats-new.rst and reshaping.rst. But these complaints don't make any sense to me. Some examples: doc/reshaping.rst:195:1: E112 expected an indented block doc/reshaping.rst:203:1: E101 indentation contains mixed spaces and tabs doc/reshaping.rst:203:1: W191 indentation contains tabs doc/reshaping.rst:203:2: E113 unexpected indentation I've played around with it a bit but not seen any changes to the complaints. What is going on? Should I even worry about the .rst files?

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300600778 https://github.com/pydata/xarray/pull/1389#issuecomment-300600778 https://api.github.com/repos/pydata/xarray/issues/1389 MDEyOklzc3VlQ29tbWVudDMwMDYwMDc3OA== chunweiyuan 5572303 2017-05-10T20:20:12Z 2017-05-10T20:20:12Z CONTRIBUTOR

Haha, brilliant.

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300599953 https://github.com/pydata/xarray/pull/1389#issuecomment-300599953 https://api.github.com/repos/pydata/xarray/issues/1389 MDEyOklzc3VlQ29tbWVudDMwMDU5OTk1Mw== shoyer 1217238 2017-05-10T20:16:49Z 2017-05-10T20:16:49Z MEMBER

Scroll to the top of this PR and look at your first post :)

On Wed, May 10, 2017 at 11:08 AM, chunweiyuan notifications@github.com wrote:

I just made some futile attempts to find that checklist, to no avail. Mind helping me with a link? :)

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/pydata/xarray/pull/1389#issuecomment-300566860, or mute the thread https://github.com/notifications/unsubscribe-auth/ABKS1mF7Jjb2NmZ_5LZpRvUP_nwG-khgks5r4f0hgaJpZM4NMGMU .

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300566860 https://github.com/pydata/xarray/pull/1389#issuecomment-300566860 https://api.github.com/repos/pydata/xarray/issues/1389 MDEyOklzc3VlQ29tbWVudDMwMDU2Njg2MA== chunweiyuan 5572303 2017-05-10T18:08:33Z 2017-05-10T18:08:33Z CONTRIBUTOR

I just made some futile attempts to find that checklist, to no avail. Mind helping me with a link? :)

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300561177 https://github.com/pydata/xarray/pull/1389#issuecomment-300561177 https://api.github.com/repos/pydata/xarray/issues/1389 MDEyOklzc3VlQ29tbWVudDMwMDU2MTE3Nw== shoyer 1217238 2017-05-10T17:48:37Z 2017-05-10T17:48:37Z MEMBER

Today is the first time I've heard of flake8.

It's in the checklist for every new PR :).

Is this how you guys standardize quality checks?

Yes. It would be nice to run this as a continuous integration test but we haven't set that up that.

Running it once with either Python 2 or 3 is fine -- it should give the same output either way.

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300555321 https://github.com/pydata/xarray/pull/1389#issuecomment-300555321 https://api.github.com/repos/pydata/xarray/issues/1389 MDEyOklzc3VlQ29tbWVudDMwMDU1NTMyMQ== chunweiyuan 5572303 2017-05-10T17:30:32Z 2017-05-10T17:30:32Z CONTRIBUTOR

Today is the first time I've heard of flake8. Is this how you guys standardize quality checks? If so, do you run once for python 3.5 and once for 2.7?

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300552112 https://github.com/pydata/xarray/pull/1389#issuecomment-300552112 https://api.github.com/repos/pydata/xarray/issues/1389 MDEyOklzc3VlQ29tbWVudDMwMDU1MjExMg== shoyer 1217238 2017-05-10T17:18:54Z 2017-05-10T17:18:54Z MEMBER

@chunweiyuan have you run flake8 on this?

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300534562 https://github.com/pydata/xarray/pull/1389#issuecomment-300534562 https://api.github.com/repos/pydata/xarray/issues/1389 MDEyOklzc3VlQ29tbWVudDMwMDUzNDU2Mg== chunweiyuan 5572303 2017-05-10T16:16:28Z 2017-05-10T16:16:28Z CONTRIBUTOR

Looks ready now.

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300306624 https://github.com/pydata/xarray/pull/1389#issuecomment-300306624 https://api.github.com/repos/pydata/xarray/issues/1389 MDEyOklzc3VlQ29tbWVudDMwMDMwNjYyNA== chunweiyuan 5572303 2017-05-09T21:27:06Z 2017-05-09T21:27:06Z CONTRIBUTOR

Think I just copied something over from variable.py and changed the message a little bit...

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300292452 https://github.com/pydata/xarray/pull/1389#issuecomment-300292452 https://api.github.com/repos/pydata/xarray/issues/1389 MDEyOklzc3VlQ29tbWVudDMwMDI5MjQ1Mg== shoyer 1217238 2017-05-09T20:32:10Z 2017-05-09T20:32:10Z MEMBER

Ah, good to know.

In that case, let's add a check for dtype == object based on numpy.__version__ (search for LooseVersion for examples in the xarray codebase) and raise an informative NotImplementedError when necessary.

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300289437 https://github.com/pydata/xarray/pull/1389#issuecomment-300289437 https://api.github.com/repos/pydata/xarray/issues/1389 MDEyOklzc3VlQ29tbWVudDMwMDI4OTQzNw== chunweiyuan 5572303 2017-05-09T20:20:44Z 2017-05-09T20:20:44Z CONTRIBUTOR

From numpy 1.11.0 release notes: ``` np.lexsort now supports arrays with object data-type

The function now internally calls the generic npy_amergesort when the type does not implement a merge-sort kind of argsort method. ```

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300283451 https://github.com/pydata/xarray/pull/1389#issuecomment-300283451 https://api.github.com/repos/pydata/xarray/issues/1389 MDEyOklzc3VlQ29tbWVudDMwMDI4MzQ1MQ== chunweiyuan 5572303 2017-05-09T19:57:39Z 2017-05-09T19:57:39Z CONTRIBUTOR

1.10.4 failed with the merge sort error. 1.11.0 failed with some error that had nothing to do with merge sort (Reason: image not found. Make sure your test modules/packages have valid Python names.) Starting from 1.11.1 it works fine.

What's the best course of action now?

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300269107 https://github.com/pydata/xarray/pull/1389#issuecomment-300269107 https://api.github.com/repos/pydata/xarray/issues/1389 MDEyOklzc3VlQ29tbWVudDMwMDI2OTEwNw== shoyer 1217238 2017-05-09T19:02:43Z 2017-05-09T19:02:43Z MEMBER

If I downgrade to numpy 1.10, I get that error. Once upgraded to 1.12, it goes away......

Does it work on numpy 1.11?

We could potentially (partially) drop compatibility for older numpy releases. Or if we can identify the issue, we can raise an informative error or use a work-around.

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300267772 https://github.com/pydata/xarray/pull/1389#issuecomment-300267772 https://api.github.com/repos/pydata/xarray/issues/1389 MDEyOklzc3VlQ29tbWVudDMwMDI2Nzc3Mg== chunweiyuan 5572303 2017-05-09T18:57:51Z 2017-05-09T18:57:51Z CONTRIBUTOR

If I downgrade to numpy 1.10, I get that error. Once upgraded to 1.12, it goes away......

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300030799 https://github.com/pydata/xarray/pull/1389#issuecomment-300030799 https://api.github.com/repos/pydata/xarray/issues/1389 MDEyOklzc3VlQ29tbWVudDMwMDAzMDc5OQ== shoyer 1217238 2017-05-09T00:52:59Z 2017-05-09T00:52:59Z MEMBER

Looks like one the Travis-CI tests failing on the sortby tests: https://travis-ci.org/pydata/xarray/jobs/229457729#L342

It's not immediately clear to me what's going on there, but maybe it's an issue with the old version of NumPy? The error is TypeError: merge sort not available for item 0.

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300029141 https://github.com/pydata/xarray/pull/1389#issuecomment-300029141 https://api.github.com/repos/pydata/xarray/issues/1389 MDEyOklzc3VlQ29tbWVudDMwMDAyOTE0MQ== chunweiyuan 5572303 2017-05-09T00:39:44Z 2017-05-09T00:39:44Z CONTRIBUTOR

Perhaps it's finally ready for prime time?

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299645639 https://github.com/pydata/xarray/pull/1389#issuecomment-299645639 https://api.github.com/repos/pydata/xarray/issues/1389 MDEyOklzc3VlQ29tbWVudDI5OTY0NTYzOQ== chunweiyuan 5572303 2017-05-06T15:04:31Z 2017-05-06T15:04:31Z CONTRIBUTOR

I've added a tiny bit of extra docstring just to ease my discomfort about the NaN sort. If you feel it's redundant I can remove it.

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299230655 https://github.com/pydata/xarray/pull/1389#issuecomment-299230655 https://api.github.com/repos/pydata/xarray/issues/1389 MDEyOklzc3VlQ29tbWVudDI5OTIzMDY1NQ== chunweiyuan 5572303 2017-05-04T16:01:45Z 2017-05-04T16:01:45Z CONTRIBUTOR

Almost time to merge this baby in? :)

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298371922 https://github.com/pydata/xarray/pull/1389#issuecomment-298371922 https://api.github.com/repos/pydata/xarray/issues/1389 MDEyOklzc3VlQ29tbWVudDI5ODM3MTkyMg== shoyer 1217238 2017-05-01T16:49:43Z 2017-05-01T16:49:43Z MEMBER

Indeed, please ignore the first CI build on Travis. For some inexplicable reason it is installing the pandas 0.20rc, which is failing due to https://github.com/pydata/xarray/issues/1386.

I am slightly in favor of sortby but also could go either way. The PEP8 guidance on function/method naming is "lowercase with words separated by underscores as necessary to improve readability." I don't think an underscore is necessary for readability here.

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298365438 https://github.com/pydata/xarray/pull/1389#issuecomment-298365438 https://api.github.com/repos/pydata/xarray/issues/1389 MDEyOklzc3VlQ29tbWVudDI5ODM2NTQzOA== chunweiyuan 5572303 2017-05-01T16:18:55Z 2017-05-01T16:18:55Z CONTRIBUTOR

Weird. Travis seems to fail in places unrelated to my changes.

I'm rather agnostic to sortby vs. sort_by.

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298162358 https://github.com/pydata/xarray/pull/1389#issuecomment-298162358 https://api.github.com/repos/pydata/xarray/issues/1389 MDEyOklzc3VlQ29tbWVudDI5ODE2MjM1OA== max-sixty 5635139 2017-04-29T11:05:30Z 2017-04-29T11:05:30Z MEMBER

We want this as sortby, rather than sort_by? Generally the latter would be more idiomatic, but if there is prior sortby out there, I would vote for consistency

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