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  • xr.where not picking up nan from another NetCDF file · 5 ✖
id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
476691683 https://github.com/pydata/xarray/issues/1381#issuecomment-476691683 https://api.github.com/repos/pydata/xarray/issues/1381 MDEyOklzc3VlQ29tbWVudDQ3NjY5MTY4Mw== stale[bot] 26384082 2019-03-26T15:06:06Z 2019-03-26T15:06:06Z NONE

In order to maintain a list of currently relevant issues, we mark issues as stale after a period of inactivity

If this issue remains relevant, please comment here or remove the stale label; otherwise it will be marked as closed automatically

 
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   xr.where not picking up nan from another NetCDF file 223610210
297047068 https://github.com/pydata/xarray/issues/1381#issuecomment-297047068 https://api.github.com/repos/pydata/xarray/issues/1381 MDEyOklzc3VlQ29tbWVudDI5NzA0NzA2OA== raybellwaves 17162724 2017-04-25T14:25:30Z 2017-04-25T14:25:30Z CONTRIBUTOR

For the HPC I used pip install numpy scipy netCDF4 xarray Yes this is linux.

For my laptop I used conda install xarray This is a MacBook Pro

 
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   xr.where not picking up nan from another NetCDF file 223610210
296866355 https://github.com/pydata/xarray/issues/1381#issuecomment-296866355 https://api.github.com/repos/pydata/xarray/issues/1381 MDEyOklzc3VlQ29tbWVudDI5Njg2NjM1NQ== shoyer 1217238 2017-04-25T01:32:10Z 2017-04-25T01:32:10Z MEMBER

You installed these setups with conda-forge? And you're running on Linux? Let me see if I can reproduce this... my guess is that it may be related to the version of the netCDF4 library

On Mon, Apr 24, 2017 at 11:27 AM, raybellwaves notifications@github.com wrote:

@shoyer https://github.com/shoyer thanks for looking into this.

Firstly, I updated the hs netCDF file as it was a different size then expected: (1, 82, 131) instead of (1, 81, 181). I've corrected this now but I am still getting an error message.

I've added the version numbers and outputs to https://github.com/ raybellwaves/xarray_issue/blob/master/xr_where_issue.py

I have two setups. I run my model experiments and do most of my analysis on a HPC. However, I do most of my plotting on my laptop for ease of viewing. To help me debug this i've run the code on both setups (which each have different python version etc.) but a priority is the more up to date HPC python version. I've including the output from both though.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/pydata/xarray/issues/1381#issuecomment-296781813, or mute the thread https://github.com/notifications/unsubscribe-auth/ABKS1hMpmxppTrFFivnj7Xy6J7YlEEY3ks5rzOmpgaJpZM4NFSwr . 

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   xr.where not picking up nan from another NetCDF file 223610210
296781813 https://github.com/pydata/xarray/issues/1381#issuecomment-296781813 https://api.github.com/repos/pydata/xarray/issues/1381 MDEyOklzc3VlQ29tbWVudDI5Njc4MTgxMw== raybellwaves 17162724 2017-04-24T18:27:52Z 2017-04-24T18:28:28Z CONTRIBUTOR

@shoyer thanks for looking into this.

Firstly, I updated the hs netCDF file as it was a different size then expected: (1, 82, 131) instead of (1, 81, 131). I've corrected this now but I am still getting an error message.

I've added the version numbers and outputs to https://github.com/raybellwaves/xarray_issue/blob/master/xr_where_issue.py

I have two setups. I run my model experiments and do most of my analysis on a HPC. However, I do most of my plotting on my laptop for ease of viewing. To help me debug this i've run the code on both setups (which each have different python version etc.) but a priority is the more up to date HPC python version. I've including the output from both though.

 
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   xr.where not picking up nan from another NetCDF file 223610210
296419393 https://github.com/pydata/xarray/issues/1381#issuecomment-296419393 https://api.github.com/repos/pydata/xarray/issues/1381 MDEyOklzc3VlQ29tbWVudDI5NjQxOTM5Mw== shoyer 1217238 2017-04-23T04:45:09Z 2017-04-23T04:45:09Z MEMBER

@raybellwaves Thanks for following up with details!

Can you please share the versions of xarray and netCDF4-python you were using when you encountered this issue?

(I have not been able to reproduce this yet)

 
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   xr.where not picking up nan from another NetCDF file 223610210

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