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  • kmuehlbauer · 5 ✖

issue 1

  • `open_dataset` with `chunks="auto"` fails when a netCDF4 variables/coordinates is encoded as `NC_STRING` · 5 ✖

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id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
1561584592 https://github.com/pydata/xarray/issues/7868#issuecomment-1561584592 https://api.github.com/repos/pydata/xarray/issues/7868 IC_kwDOAMm_X85dE-PQ kmuehlbauer 5821660 2023-05-24T16:50:34Z 2023-05-24T16:50:34Z MEMBER

Thanks @ghiggi for your comment.

The problem is we have at least two contradicting user requests here, see #7328 and #7862.

I'm sure there is a solution to accommodate both sides. 

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   `open_dataset` with `chunks="auto"` fails when a netCDF4 variables/coordinates is encoded as `NC_STRING` 1722417436
1561214028 https://github.com/pydata/xarray/issues/7868#issuecomment-1561214028 https://api.github.com/repos/pydata/xarray/issues/7868 IC_kwDOAMm_X85dDjxM kmuehlbauer 5821660 2023-05-24T13:58:16Z 2023-05-24T13:58:16Z MEMBER

My main question here is, why is dask not trying to retrieve the object types from dtype.metadata? Or does it and fail for some reason?.

 
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   `open_dataset` with `chunks="auto"` fails when a netCDF4 variables/coordinates is encoded as `NC_STRING` 1722417436
1560674198 https://github.com/pydata/xarray/issues/7868#issuecomment-1560674198 https://api.github.com/repos/pydata/xarray/issues/7868 IC_kwDOAMm_X85dBf-W kmuehlbauer 5821660 2023-05-24T08:27:11Z 2023-05-24T08:27:11Z MEMBER

@ghiggi Glad it works, but we still have to check if that is the correct location for the fix, as it's not CF specific.

 
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   `open_dataset` with `chunks="auto"` fails when a netCDF4 variables/coordinates is encoded as `NC_STRING` 1722417436
1559959581 https://github.com/pydata/xarray/issues/7868#issuecomment-1559959581 https://api.github.com/repos/pydata/xarray/issues/7868 IC_kwDOAMm_X85c-xgd kmuehlbauer 5821660 2023-05-23T18:42:55Z 2023-05-23T19:01:00Z MEMBER

@ghiggi Thanks for getting this back into action. I got dragged away from the one string object issue in #7654. I'll split this out and add a PR.

 
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   `open_dataset` with `chunks="auto"` fails when a netCDF4 variables/coordinates is encoded as `NC_STRING` 1722417436
1559973194 https://github.com/pydata/xarray/issues/7868#issuecomment-1559973194 https://api.github.com/repos/pydata/xarray/issues/7868 IC_kwDOAMm_X85c-01K kmuehlbauer 5821660 2023-05-23T18:55:46Z 2023-05-23T18:55:46Z MEMBER

@ghiggi I'd appreciate if you could test your workflows against #7869. Your example and the one over in #7652 are working AFAICT.

 
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   `open_dataset` with `chunks="auto"` fails when a netCDF4 variables/coordinates is encoded as `NC_STRING` 1722417436

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