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  • keewis · 3 ✖

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  • Opening a variable as several chunks works fine, but opening it "fully" crashes · 3 ✖

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id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
1373624790 https://github.com/pydata/xarray/issues/7421#issuecomment-1373624790 https://api.github.com/repos/pydata/xarray/issues/7421 IC_kwDOAMm_X85R39nW keewis 14808389 2023-01-06T13:27:54Z 2023-01-06T13:27:54Z MEMBER

I do not provide a dedicated engine in the open_dataset command, so I guess this is using the netcdf4 engine by default?

Depends on the file format, but in general, I'd recommend passing the engine kwarg explicitly.

 
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   Opening a variable as several chunks works fine, but opening it "fully" crashes 1520760951
1373591714 https://github.com/pydata/xarray/issues/7421#issuecomment-1373591714 https://api.github.com/repos/pydata/xarray/issues/7421 IC_kwDOAMm_X85R31ii keewis 14808389 2023-01-06T13:01:50Z 2023-01-06T13:01:50Z MEMBER

This is what I'm doing: python In [1]: import xarray as xr ...: ...: ds = xr.open_dataset("2018_03_b.nc", decode_times=False) ...: ds["accD"].data Out[1]: array([[-9.625633e+00, -9.587038e+00, -9.601438e+00, ..., -9.543669e+00, -9.519094e+00, -9.509479e+00], [-9.705109e+00, -9.658272e+00, -9.672318e+00, ..., 9.969210e+36, 9.969210e+36, 9.969210e+36]], dtype=float32)

 
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   Opening a variable as several chunks works fine, but opening it "fully" crashes 1520760951
1373581179 https://github.com/pydata/xarray/issues/7421#issuecomment-1373581179 https://api.github.com/repos/pydata/xarray/issues/7421 IC_kwDOAMm_X85R3y97 keewis 14808389 2023-01-06T12:49:32Z 2023-01-06T12:49:32Z MEMBER

I'm able to open the dataset just fine, so I'd think this has something to do with your environment. Can you try creating a more recent one, using something like: mamba create -n test -c conda-forge python=3.10 xarray netcdf4 ... Also, what engine are you using to read the file? netcdf4?

 
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   Opening a variable as several chunks works fine, but opening it "fully" crashes 1520760951

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