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  • PermissionError: [Errno 13] Permission denied · 5 ✖
id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
1187959131 https://github.com/pydata/xarray/issues/6805#issuecomment-1187959131 https://api.github.com/repos/pydata/xarray/issues/6805 IC_kwDOAMm_X85GztFb lassiterdc 64621312 2022-07-18T17:57:35Z 2022-07-18T17:57:35Z NONE

I can't believe I forgot the asterisk!!! Thank you for catching that.

 
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   PermissionError: [Errno 13] Permission denied 1308176241
1187944534 https://github.com/pydata/xarray/issues/6805#issuecomment-1187944534 https://api.github.com/repos/pydata/xarray/issues/6805 IC_kwDOAMm_X85GzphW dcherian 2448579 2022-07-18T17:53:57Z 2022-07-18T17:53:57Z MEMBER

Ah you should be able to pass "data/*" too directly to open_mfdataset

 
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   PermissionError: [Errno 13] Permission denied 1308176241
1187922418 https://github.com/pydata/xarray/issues/6805#issuecomment-1187922418 https://api.github.com/repos/pydata/xarray/issues/6805 IC_kwDOAMm_X85GzkHy andersy005 13301940 2022-07-18T17:47:18Z 2022-07-18T17:47:18Z MEMBER

@lassiterdc, in your example above, f_in_ncs is just a string and you are passing this string to xr.open_mfdataset() which i don't think knows what to do with it.

python f_in_ncs = "data/"

have you tried retrieving the list of all files under "data/" via the glob module?

```python import glob f_in_ncs = sorted(glob.glob("data/*.nc"))

mf_ds = xr.open_mfdataset(f_in_ncs, concat_dim = "time", chunks={'outlat':3500, 'outlon':7000, 'time':50}, combine = "nested", engine = 'netcdf4') ```

 
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   PermissionError: [Errno 13] Permission denied 1308176241
1187910591 https://github.com/pydata/xarray/issues/6805#issuecomment-1187910591 https://api.github.com/repos/pydata/xarray/issues/6805 IC_kwDOAMm_X85GzhO_ lassiterdc 64621312 2022-07-18T17:42:14Z 2022-07-18T17:42:14Z NONE

I just edited the original post to show that xr.open_dataset works. I hope that is adequate to show that the issue is with xarray and not netcdf4.Dataset.

 
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   PermissionError: [Errno 13] Permission denied 1308176241
1187693692 https://github.com/pydata/xarray/issues/6805#issuecomment-1187693692 https://api.github.com/repos/pydata/xarray/issues/6805 IC_kwDOAMm_X85GysR8 dcherian 2448579 2022-07-18T16:13:18Z 2022-07-18T16:13:18Z MEMBER

Can you try opening it directly with netcdf4.Dataset please? If that does not work, then please raise an issue with that package.

 
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   PermissionError: [Errno 13] Permission denied 1308176241

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