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  • max-sixty · 2 ✖

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  • Loading from NetCDF creates unnecessary numpy.ndarray-views that clears the OWNDATA-flag · 2 ✖

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id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
1110354387 https://github.com/pydata/xarray/issues/6517#issuecomment-1110354387 https://api.github.com/repos/pydata/xarray/issues/6517 IC_kwDOAMm_X85CLqnT max-sixty 5635139 2022-04-26T23:48:44Z 2022-04-26T23:48:44Z MEMBER

I don't know this well — maybe others can comment — but the example checks out.

Would we take this as a PR? Is there a simpler way to express that logic?

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  Loading from NetCDF creates unnecessary numpy.ndarray-views that clears the OWNDATA-flag 1216517115
1110353767 https://github.com/pydata/xarray/issues/6517#issuecomment-1110353767 https://api.github.com/repos/pydata/xarray/issues/6517 IC_kwDOAMm_X85CLqdn max-sixty 5635139 2022-04-26T23:47:14Z 2022-04-26T23:47:14Z MEMBER

For others, here's the diff:

```diff diff --git "indexing.original.py" "indexing.patched.py" --- "indexing.original.py" +++ "indexing.patched.py" @@ -709,8 +709,12 @@ def explicit_indexing_adapter( """ raw_key, numpy_indices = decompose_indexer(key, shape, indexing_support) result = raw_indexing_method(raw_key.tuple) - if numpy_indices.tuple: - result = NumpyIndexingAdapter(np.asarray(result))[numpy_indices] + if numpy_indices.tuple and (not isinstance(result, np.ndarray) + or not all(i == slice(None, None, None) for i in numpy_indices.tuple)): + # The conditions within parentehses are to avoid unnecessary array slice/view-creation + # that would set flags['OWNDATA'] to False for no reason. + # Index the loaded np.ndarray. + result = NumpyIndexingAdapter(np.asarray(result))[numpy_indices] return result

@@ -1156,6 +1160,11 @@ class NumpyIndexingAdapter(ExplicitlyIndexedNDArrayMixin):

 def __getitem__(self, key):
     array, key = self._indexing_array_and_key(key)
  • if ((len(key) == len(array.shape) or (len(key) == len(array.shape) + 1 and key[-1] is ...))
  • and all(isinstance(i, slice) and i == slice(None, None, None) for i in key[:len(array.shape)])
  • and isinstance(array, np.ndarray)): # (The isinstance-check is because nputils.NumpyVIndexAdapter() has not been tested.)
  • Avoid unnecessary array slice/view-creation that would set flags['OWNDATA'] to False for no reason.

  • return array return array[key]

    def setitem(self, key, value):

```

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  Loading from NetCDF creates unnecessary numpy.ndarray-views that clears the OWNDATA-flag 1216517115

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