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- 2022.03.0: sphinx fails on generate documentation · 5 ✖
| id | html_url | issue_url | node_id | user | created_at | updated_at ▲ | author_association | body | reactions | performed_via_github_app | issue |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1265849564 | https://github.com/pydata/xarray/issues/6454#issuecomment-1265849564 | https://api.github.com/repos/pydata/xarray/issues/6454 | IC_kwDOAMm_X85Lc1Tc | kloczek 31284574 | 2022-10-03T18:20:09Z | 2022-10-03T18:20:09Z | NONE | So someting is messing with |
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2022.03.0: sphinx fails on generate documentation 1196425693 | |
| 1261230922 | https://github.com/pydata/xarray/issues/6454#issuecomment-1261230922 | https://api.github.com/repos/pydata/xarray/issues/6454 | IC_kwDOAMm_X85LLNtK | kloczek 31284574 | 2022-09-28T17:27:37Z | 2022-09-28T17:27:37Z | NONE |
Please have look one more time on top patch.
I'm building documentation after |
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2022.03.0: sphinx fails on generate documentation 1196425693 | |
| 1102134733 | https://github.com/pydata/xarray/issues/6454#issuecomment-1102134733 | https://api.github.com/repos/pydata/xarray/issues/6454 | IC_kwDOAMm_X85BsT3N | kloczek 31284574 | 2022-04-19T06:17:35Z | 2022-04-19T06:17:35Z | NONE |
If you will follow procedure which I've provided by executing |
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2022.03.0: sphinx fails on generate documentation 1196425693 | |
| 1100283959 | https://github.com/pydata/xarray/issues/6454#issuecomment-1100283959 | https://api.github.com/repos/pydata/xarray/issues/6454 | IC_kwDOAMm_X85BlQA3 | kloczek 31284574 | 2022-04-15T18:37:22Z | 2022-04-15T18:37:22Z | NONE |
Issue seems is in other place after add patch ```patch --- a/doc/conf.py~ 2022-03-02 15:49:23.000000000 +0000 +++ b/doc/conf.py 2022-04-15 18:32:06.848726986 +0000 @@ -17,6 +17,9 @@ import os import subprocess import sys + +sys.path.append(os.path.abspath('..')) + from contextlib import suppress import sphinx_autosummary_accessors
import xarray as xr import matplotlib.pyplot as plt ModuleNotFoundError Traceback (most recent call last) /tmp/ipykernel_1995816/830426931.py in <module> ----> 1 import xarray as xr 2 import matplotlib.pyplot as plt ModuleNotFoundError: No module named 'xarray' ModuleNotFoundError: No module named 'xarray' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3.8/site-packages/sphinx/cmd/build.py", line 276, in build_main app.build(args.force_all, filenames) File "/usr/lib/python3.8/site-packages/sphinx/application.py", line 330, in build self.builder.build_update() File "/usr/lib/python3.8/site-packages/sphinx/builders/init.py", line 283, in build_update self.build(['all'], to_build) File "/usr/lib/python3.8/site-packages/sphinx/builders/init.py", line 300, in build updated_docnames = set(self.read()) File "/usr/lib/python3.8/site-packages/sphinx/builders/init.py", line 407, in read self._read_serial(docnames) File "/usr/lib/python3.8/site-packages/sphinx/builders/init.py", line 428, in _read_serial self.read_doc(docname) File "/usr/lib/python3.8/site-packages/sphinx/builders/init.py", line 468, in read_doc doctree = read_doc(self.app, self.env, self.env.doc2path(docname)) File "/usr/lib/python3.8/site-packages/sphinx/io.py", line 181, in read_doc pub.publish() File "/usr/lib/python3.8/site-packages/docutils/core.py", line 217, in publish self.document = self.reader.read(self.source, self.parser, File "/usr/lib/python3.8/site-packages/sphinx/io.py", line 101, in read self.parse() File "/usr/lib/python3.8/site-packages/docutils/readers/init.py", line 78, in parse self.parser.parse(self.input, document) File "/usr/lib/python3.8/site-packages/nbsphinx.py", line 1039, in parse raise NotebookError('\n'.join(lines)) nbsphinx.NotebookError: CellExecutionError in examples/ERA5-GRIB-example.ipynb: import xarray as xr import matplotlib.pyplot as plt ModuleNotFoundError Traceback (most recent call last) /tmp/ipykernel_1995816/830426931.py in <module> ----> 1 import xarray as xr 2 import matplotlib.pyplot as plt ModuleNotFoundError: No module named 'xarray' ModuleNotFoundError: No module named 'xarray' You can ignore this error by setting the following in conf.py: Notebook error: CellExecutionError in examples/ERA5-GRIB-example.ipynb: import xarray as xr import matplotlib.pyplot as plt ModuleNotFoundError Traceback (most recent call last) /tmp/ipykernel_1995816/830426931.py in <module> ----> 1 import xarray as xr 2 import matplotlib.pyplot as plt ModuleNotFoundError: No module named 'xarray' ModuleNotFoundError: No module named 'xarray' You can ignore this error by setting the following in conf.py:
Could ypu please try to reproduce this issue by uninstall |
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2022.03.0: sphinx fails on generate documentation 1196425693 | |
| 1092170184 | https://github.com/pydata/xarray/issues/6454#issuecomment-1092170184 | https://api.github.com/repos/pydata/xarray/issues/6454 | IC_kwDOAMm_X85BGTHI | kloczek 31284574 | 2022-04-07T20:26:56Z | 2022-04-07T20:26:56Z | NONE | I've added ipykernel to build dependencies and build moved few steps forward and failed again ```console + PYTHONPATH=/home/tkloczko/rpmbuild/BUILD/xarray-2022.03.0 + /usr/bin/python3 setup.py build_sphinx -b man --build-dir build/sphinx /usr/lib/python3.8/site-packages/setuptools/dist.py:505: UserWarning: Normalizing '2022.03.0' to '2022.3.0' warnings.warn(tmpl.format(**locals())) running build_sphinx Running Sphinx v4.5.0 python exec: /usr/bin/python3 sys.path: ['/home/tkloczko/rpmbuild/BUILD/xarray-2022.03.0', '/home/tkloczko/rpmbuild/BUILD/xarray-2022.03.0', '/usr/lib64/python38.zip', '/usr/lib64/python3.8', '/usr/lib64/python3.8/lib-dynload', '/usr/lib64/python3.8/site-packages', '/usr/lib/python3.8/site-packages'] xarray: 2022.3.0, /home/tkloczko/rpmbuild/BUILD/xarray-2022.03.0/xarray/init.py making output directory... done [autosummary] generating autosummary for: README.rst, api-hidden.rst, api.rst, contributing.rst, developers-meeting.rst, ecosystem.rst, examples/ERA5-GRIB-example.ipynb, examples/ROMS_ocean_model.ipynb, examples/apply_ufunc_vectorize_1d.ipynb, examples/area_weighted_temperature.ipynb, ..., user-guide/indexing.rst, user-guide/interpolation.rst, user-guide/io.rst, user-guide/pandas.rst, user-guide/plotting.rst, user-guide/reshaping.rst, user-guide/terminology.rst, user-guide/time-series.rst, user-guide/weather-climate.rst, whats-new.rst [autosummary] generating autosummary for: /home/tkloczko/rpmbuild/BUILD/xarray-2022.03.0/doc/generated/xarray.CFTimeIndex.T.rst, /home/tkloczko/rpmbuild/BUILD/xarray-2022.03.0/doc/generated/xarray.CFTimeIndex.all.rst, /home/tkloczko/rpmbuild/BUILD/xarray-2022.03.0/doc/generated/xarray.CFTimeIndex.any.rst, /home/tkloczko/rpmbuild/BUILD/xarray-2022.03.0/doc/generated/xarray.CFTimeIndex.append.rst, /home/tkloczko/rpmbuild/BUILD/xarray-2022.03.0/doc/generated/xarray.CFTimeIndex.argmax.rst, /home/tkloczko/rpmbuild/BUILD/xarray-2022.03.0/doc/generated/xarray.CFTimeIndex.argmin.rst, /home/tkloczko/rpmbuild/BUILD/xarray-2022.03.0/doc/generated/xarray.CFTimeIndex.argsort.rst, /home/tkloczko/rpmbuild/BUILD/xarray-2022.03.0/doc/generated/xarray.CFTimeIndex.array.rst, /home/tkloczko/rpmbuild/BUILD/xarray-2022.03.0/doc/generated/xarray.CFTimeIndex.asi8.rst, /home/tkloczko/rpmbuild/BUILD/xarray-2022.03.0/doc/generated/xarray.CFTimeIndex.asof.rst, ..., /home/tkloczko/rpmbuild/BUILD/xarray-2022.03.0/doc/generated/xarray.ufuncs.sin.rst, /home/tkloczko/rpmbuild/BUILD/xarray-2022.03.0/doc/generated/xarray.ufuncs.sinh.rst, /home/tkloczko/rpmbuild/BUILD/xarray-2022.03.0/doc/generated/xarray.ufuncs.sqrt.rst, /home/tkloczko/rpmbuild/BUILD/xarray-2022.03.0/doc/generated/xarray.ufuncs.square.rst, /home/tkloczko/rpmbuild/BUILD/xarray-2022.03.0/doc/generated/xarray.ufuncs.tan.rst, /home/tkloczko/rpmbuild/BUILD/xarray-2022.03.0/doc/generated/xarray.ufuncs.tanh.rst, /home/tkloczko/rpmbuild/BUILD/xarray-2022.03.0/doc/generated/xarray.ufuncs.trunc.rst, /home/tkloczko/rpmbuild/BUILD/xarray-2022.03.0/doc/generated/xarray.unify_chunks.rst, /home/tkloczko/rpmbuild/BUILD/xarray-2022.03.0/doc/generated/xarray.where.rst, /home/tkloczko/rpmbuild/BUILD/xarray-2022.03.0/doc/generated/xarray.zeros_like.rst loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://pandas.pydata.org/pandas-docs/stable/objects.inv... loading intersphinx inventory from https://scitools-iris.readthedocs.io/en/latest/objects.inv... loading intersphinx inventory from https://numpy.org/doc/stable/objects.inv... loading intersphinx inventory from https://docs.scipy.org/doc/scipy/objects.inv... loading intersphinx inventory from https://numba.pydata.org/numba-doc/latest/objects.inv... loading intersphinx inventory from https://matplotlib.org/stable/objects.inv... loading intersphinx inventory from https://docs.dask.org/en/latest/objects.inv... loading intersphinx inventory from https://unidata.github.io/cftime/objects.inv... loading intersphinx inventory from https://rasterio.readthedocs.io/en/latest/objects.inv... loading intersphinx inventory from https://sparse.pydata.org/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [man]: all manpages updating environment: [new config] 1282 added, 0 changed, 0 removed reading sources... [ 0%] examples/ERA5-GRIB-example Notebook error: CellExecutionError in examples/ERA5-GRIB-example.ipynb: ds = xr.tutorial.load_dataset("era5-2mt-2019-03-uk.grib", engine="cfgrib")ValueError Traceback (most recent call last) /tmp/ipykernel_599775/3699872736.py in <module> ----> 1 ds = xr.tutorial.load_dataset("era5-2mt-2019-03-uk.grib", engine="cfgrib") ~/rpmbuild/BUILD/xarray-2022.03.0/xarray/tutorial.py in load_dataset(args, kwargs) 223 open_dataset 224 """ --> 225 with open_dataset(args, **kwargs) as ds: 226 return ds.load() 227 ~/rpmbuild/BUILD/xarray-2022.03.0/xarray/tutorial.py in open_dataset(name, cache, cache_dir, engine, kws) 141 # retrieve the file 142 filepath = pooch.retrieve(url=url, known_hash=None, path=cache_dir) --> 143 ds = _open_dataset(filepath, engine=engine, kws) 144 if not cache: 145 ds = ds.load() ~/rpmbuild/BUILD/xarray-2022.03.0/xarray/backends/api.py in open_dataset(filename_or_obj, engine, chunks, cache, decode_cf, mask_and_scale, decode_times, decode_timedelta, use_cftime, concat_characters, decode_coords, drop_variables, backend_kwargs, args, *kwargs) 479 engine = plugins.guess_engine(filename_or_obj) 480 --> 481 backend = plugins.get_backend(engine) 482 483 decoders = _resolve_decoders_kwargs( ~/rpmbuild/BUILD/xarray-2022.03.0/xarray/backends/plugins.py in get_backend(engine) 154 engines = list_engines() 155 if engine not in engines: --> 156 raise ValueError( 157 f"unrecognized engine {engine} must be one of: {list(engines)}" 158 ) ValueError: unrecognized engine cfgrib must be one of: ['store'] ValueError: unrecognized engine cfgrib must be one of: ['store'] You can ignore this error by setting the following in conf.py: ``` |
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2022.03.0: sphinx fails on generate documentation 1196425693 |
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