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user 3

  • clarkfitzg 24
  • shoyer 7
  • jhamman 2

issue 1

  • faceted plots · 33 ✖

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  • MEMBER 33
id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
137871954 https://github.com/pydata/xarray/pull/527#issuecomment-137871954 https://api.github.com/repos/pydata/xarray/issues/527 MDEyOklzc3VlQ29tbWVudDEzNzg3MTk1NA== shoyer 1217238 2015-09-04T22:35:11Z 2015-09-04T22:35:11Z MEMBER

I haven't been very careful about insisting on a clean git history so far, so don't worry about rebase/squash.

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137870866 https://github.com/pydata/xarray/pull/527#issuecomment-137870866 https://api.github.com/repos/pydata/xarray/issues/527 MDEyOklzc3VlQ29tbWVudDEzNzg3MDg2Ng== clarkfitzg 5356122 2015-09-04T22:25:25Z 2015-09-04T22:25:25Z MEMBER

Ok, going to merge once the build passes. Will continue with the rest of the stuff next week. @shoyer should I rebase or squash these commits?

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137869341 https://github.com/pydata/xarray/pull/527#issuecomment-137869341 https://api.github.com/repos/pydata/xarray/issues/527 MDEyOklzc3VlQ29tbWVudDEzNzg2OTM0MQ== shoyer 1217238 2015-09-04T22:19:10Z 2015-09-04T22:19:10Z MEMBER

I think this is pretty much good to go. Merge at your discretion!

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137835422 https://github.com/pydata/xarray/pull/527#issuecomment-137835422 https://api.github.com/repos/pydata/xarray/issues/527 MDEyOklzc3VlQ29tbWVudDEzNzgzNTQyMg== clarkfitzg 5356122 2015-09-04T19:37:08Z 2015-09-04T19:37:08Z MEMBER

@shoyer Latest commit also added a little more to the docs on how to use the attributes data axes, and name_dicts.

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137811989 https://github.com/pydata/xarray/pull/527#issuecomment-137811989 https://api.github.com/repos/pydata/xarray/issues/527 MDEyOklzc3VlQ29tbWVudDEzNzgxMTk4OQ== shoyer 1217238 2015-09-04T18:22:48Z 2015-09-04T18:22:48Z MEMBER

For the simple example in the doc -- use imshow instead of contourf? The result is definitely more aesthetically pleasing:

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137598575 https://github.com/pydata/xarray/pull/527#issuecomment-137598575 https://api.github.com/repos/pydata/xarray/issues/527 MDEyOklzc3VlQ29tbWVudDEzNzU5ODU3NQ== shoyer 1217238 2015-09-03T23:13:01Z 2015-09-03T23:13:01Z MEMBER

see https://github.com/clarkfitzg/xray/pull/1

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137588842 https://github.com/pydata/xarray/pull/527#issuecomment-137588842 https://api.github.com/repos/pydata/xarray/issues/527 MDEyOklzc3VlQ29tbWVudDEzNzU4ODg0Mg== clarkfitzg 5356122 2015-09-03T22:15:47Z 2015-09-03T22:15:47Z MEMBER

By the way, I believe this is to a point where we could easily tune any of the aesthetics- say shrinking the width of the colorbar or using a different number of ticks / sizes on the labels.

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137587792 https://github.com/pydata/xarray/pull/527#issuecomment-137587792 https://api.github.com/repos/pydata/xarray/issues/527 MDEyOklzc3VlQ29tbWVudDEzNzU4Nzc5Mg== clarkfitzg 5356122 2015-09-03T22:09:32Z 2015-09-03T22:09:32Z MEMBER

Here's what's left to do: - [ ] convenience method darray.plot(row='z') - [ ] map example using matplotlib quiver plot - [ ] port any more methods / features from Seaborn FacetGrid

@shoyer, am I forgetting anything?

Ready for this PR to be reviewed now. I can finish the rest in a follow up PR.

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131240388 https://github.com/pydata/xarray/pull/527#issuecomment-131240388 https://api.github.com/repos/pydata/xarray/issues/527 MDEyOklzc3VlQ29tbWVudDEzMTI0MDM4OA== clarkfitzg 5356122 2015-08-14T21:13:12Z 2015-09-03T21:57:53Z MEMBER

For this PR: - [x] facet on rows and columns - [x] Align label on colorbar - [x] Label figure axes - [x] Use xray plotting logic to make nice colorbar - [x] Make and test choices around colorbar

EDIT - going to revisit plt.contour(color='k') after #537 gets worked out. - [x] separate iteration over data from plotting - edge case: require the index to actually be unique .is_unique. - [x] Use core string formatting for titles - [x] tests for all of above - [x] test col_wrap - [x] write and organize docs - [x] docs for public attribute- axes and such

On this PR or possibly a different one: - [ ] Convenience method to easily make faceted plots- something like darray.plot(col='time') - [x] port Seaborn's aspect capabilities - [ ] matplotlib quiver plot for map example - [x] Create new xray.tutorial module with function like load_example_dataset for plotting examples

Different PR: - [ ] Facets and maps - [ ] Inline documentation and plots for API reference

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137490299 https://github.com/pydata/xarray/pull/527#issuecomment-137490299 https://api.github.com/repos/pydata/xarray/issues/527 MDEyOklzc3VlQ29tbWVudDEzNzQ5MDI5OQ== clarkfitzg 5356122 2015-09-03T15:45:49Z 2015-09-03T15:45:49Z MEMBER

@shoyer multiple labels on x / y axes compared to the one above.

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137282470 https://github.com/pydata/xarray/pull/527#issuecomment-137282470 https://api.github.com/repos/pydata/xarray/issues/527 MDEyOklzc3VlQ29tbWVudDEzNzI4MjQ3MA== shoyer 1217238 2015-09-03T00:36:16Z 2015-09-03T00:36:16Z MEMBER

@clarkfitzg was that second plot supposed to be different?

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137274951 https://github.com/pydata/xarray/pull/527#issuecomment-137274951 https://api.github.com/repos/pydata/xarray/issues/527 MDEyOklzc3VlQ29tbWVudDEzNzI3NDk1MQ== clarkfitzg 5356122 2015-09-02T23:45:56Z 2015-09-02T23:45:56Z MEMBER

Starting to agree with @shoyer and Seaborn on the multiple labels:

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137273992 https://github.com/pydata/xarray/pull/527#issuecomment-137273992 https://api.github.com/repos/pydata/xarray/issues/527 MDEyOklzc3VlQ29tbWVudDEzNzI3Mzk5Mg== clarkfitzg 5356122 2015-09-02T23:37:56Z 2015-09-02T23:37:56Z MEMBER

Getting better...

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137263395 https://github.com/pydata/xarray/pull/527#issuecomment-137263395 https://api.github.com/repos/pydata/xarray/issues/527 MDEyOklzc3VlQ29tbWVudDEzNzI2MzM5NQ== clarkfitzg 5356122 2015-09-02T22:30:03Z 2015-09-02T22:30:03Z MEMBER

Thanks for the encouragement @jhamman - I'll take what I can get! Seem to be finding a way around it by setting custom ax.xaxis.set_major_locator

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137257894 https://github.com/pydata/xarray/pull/527#issuecomment-137257894 https://api.github.com/repos/pydata/xarray/issues/527 MDEyOklzc3VlQ29tbWVudDEzNzI1Nzg5NA== jhamman 2443309 2015-09-02T21:58:50Z 2015-09-02T21:58:50Z MEMBER

The colorbar looks great though :wink:

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137254992 https://github.com/pydata/xarray/pull/527#issuecomment-137254992 https://api.github.com/repos/pydata/xarray/issues/527 MDEyOklzc3VlQ29tbWVudDEzNzI1NDk5Mg== clarkfitzg 5356122 2015-09-02T21:52:22Z 2015-09-02T21:52:22Z MEMBER

Aaaaaaahhh!!

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137237428 https://github.com/pydata/xarray/pull/527#issuecomment-137237428 https://api.github.com/repos/pydata/xarray/issues/527 MDEyOklzc3VlQ29tbWVudDEzNzIzNzQyOA== clarkfitzg 5356122 2015-09-02T20:37:51Z 2015-09-02T20:37:51Z MEMBER

Issues seem to be mostly caused by the colorbar.

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136885470 https://github.com/pydata/xarray/pull/527#issuecomment-136885470 https://api.github.com/repos/pydata/xarray/issues/527 MDEyOklzc3VlQ29tbWVudDEzNjg4NTQ3MA== clarkfitzg 5356122 2015-09-01T22:54:31Z 2015-09-01T22:54:31Z MEMBER

I believe it's possible to fix automatically. Somehow. Will look into it further tomorrow.

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136881281 https://github.com/pydata/xarray/pull/527#issuecomment-136881281 https://api.github.com/repos/pydata/xarray/issues/527 MDEyOklzc3VlQ29tbWVudDEzNjg4MTI4MQ== shoyer 1217238 2015-09-01T22:27:25Z 2015-09-01T22:27:25Z MEMBER

@clarkfitzg Is that something that can fixed simply by adjusting the size argument? Does matplotlib use figure size when determining tick labels? I'm not sure there's much we can do to fix this automatically.

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136880349 https://github.com/pydata/xarray/pull/527#issuecomment-136880349 https://api.github.com/repos/pydata/xarray/issues/527 MDEyOklzc3VlQ29tbWVudDEzNjg4MDM0OQ== clarkfitzg 5356122 2015-09-01T22:22:35Z 2015-09-01T22:22:45Z MEMBER

For reference, here's what is happening once aspect is adjusted. x axes are all crowded.

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136878263 https://github.com/pydata/xarray/pull/527#issuecomment-136878263 https://api.github.com/repos/pydata/xarray/issues/527 MDEyOklzc3VlQ29tbWVudDEzNjg3ODI2Mw== clarkfitzg 5356122 2015-09-01T22:09:49Z 2015-09-01T22:09:49Z MEMBER

Some issues cropping up with using plt.tight_layout when manipulating the aspect and size.

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136527660 https://github.com/pydata/xarray/pull/527#issuecomment-136527660 https://api.github.com/repos/pydata/xarray/issues/527 MDEyOklzc3VlQ29tbWVudDEzNjUyNzY2MA== clarkfitzg 5356122 2015-08-31T23:34:11Z 2015-09-01T22:02:34Z MEMBER

take aspects and figure sizes from seaborn

Done

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136525214 https://github.com/pydata/xarray/pull/527#issuecomment-136525214 https://api.github.com/repos/pydata/xarray/issues/527 MDEyOklzc3VlQ29tbWVudDEzNjUyNTIxNA== clarkfitzg 5356122 2015-08-31T23:15:30Z 2015-09-01T21:35:12Z MEMBER

add ability to set margin_titles=True.

TODO- don't really understand the use case for this.

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136849815 https://github.com/pydata/xarray/pull/527#issuecomment-136849815 https://api.github.com/repos/pydata/xarray/issues/527 MDEyOklzc3VlQ29tbWVudDEzNjg0OTgxNQ== clarkfitzg 5356122 2015-09-01T20:20:49Z 2015-09-01T20:20:49Z MEMBER

yep, could definitely do that. I'm still not crazy about repeating the x, y labels like that. Let me see if I can come up with a nice alternative using text on the figure.

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136848233 https://github.com/pydata/xarray/pull/527#issuecomment-136848233 https://api.github.com/repos/pydata/xarray/issues/527 MDEyOklzc3VlQ29tbWVudDEzNjg0ODIzMw== shoyer 1217238 2015-09-01T20:17:24Z 2015-09-01T20:17:53Z MEMBER

Skipping the missing block looks pretty nice to me!

I'm pretty happy with the aesthetics, though there's a case for copying the behavior from Seaborn, e.g.,

python attend = sns.load_dataset("attention").query('subject < 6') g = sns.FacetGrid(attend, col="subject", col_wrap=3, size=2, ylim=(0, 10), aspect=0.8) g = g.map(plt.plot, "solutions", "score")

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136847156 https://github.com/pydata/xarray/pull/527#issuecomment-136847156 https://api.github.com/repos/pydata/xarray/issues/527 MDEyOklzc3VlQ29tbWVudDEzNjg0NzE1Ng== clarkfitzg 5356122 2015-09-01T20:15:05Z 2015-09-01T20:15:05Z MEMBER

Here's what we have now with one missing block.

Not sure about these aesthetics.

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136523447 https://github.com/pydata/xarray/pull/527#issuecomment-136523447 https://api.github.com/repos/pydata/xarray/issues/527 MDEyOklzc3VlQ29tbWVudDEzNjUyMzQ0Nw== clarkfitzg 5356122 2015-08-31T23:03:43Z 2015-09-01T17:53:25Z MEMBER

todo- make sure to seed random number generator or else use deterministic

Done

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  faceted plots 100646364
136524437 https://github.com/pydata/xarray/pull/527#issuecomment-136524437 https://api.github.com/repos/pydata/xarray/issues/527 MDEyOklzc3VlQ29tbWVudDEzNjUyNDQzNw== clarkfitzg 5356122 2015-08-31T23:10:18Z 2015-08-31T23:10:18Z MEMBER

add matplotlib quiver plot for map example.

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135912898 https://github.com/pydata/xarray/pull/527#issuecomment-135912898 https://api.github.com/repos/pydata/xarray/issues/527 MDEyOklzc3VlQ29tbWVudDEzNTkxMjg5OA== clarkfitzg 5356122 2015-08-28T23:29:27Z 2015-08-28T23:29:27Z MEMBER

Here's where the progress stands:

g = xray.plot.FacetGrid(t5, col='time', col_wrap=2) g.map_dataarray(xray.plot.contour, color='k')

Looks like the column wrapping does the right thing by leaving the last axes blank.

Observe #537 is still an issue here. We'll have to make sure that when that is fixed it also works for these facets.

On Monday morning I can clean the code up, take out the seaborn chunks, reorganize the docs, and then I'll be ready to ask for a review.

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  faceted plots 100646364
131173521 https://github.com/pydata/xarray/pull/527#issuecomment-131173521 https://api.github.com/repos/pydata/xarray/issues/527 MDEyOklzc3VlQ29tbWVudDEzMTE3MzUyMQ== clarkfitzg 5356122 2015-08-14T16:37:28Z 2015-08-14T16:37:28Z MEMBER

Thanks! The colorbar label spacing is a matplotlib thing- it only became a problem after rotating it to match the row labels. So I expect that I can fix it by changing the anchor point or placing it manually.

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  faceted plots 100646364
130967264 https://github.com/pydata/xarray/pull/527#issuecomment-130967264 https://api.github.com/repos/pydata/xarray/issues/527 MDEyOklzc3VlQ29tbWVudDEzMDk2NzI2NA== jhamman 2443309 2015-08-14T05:10:45Z 2015-08-14T05:10:45Z MEMBER

@clarkfitzg - These are looking really great. I think this is going to be a really useful tool.

The colorbar label is too close to the colorbar tick label, are we manually placing that or is this a matplotlib thing?

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130903866 https://github.com/pydata/xarray/pull/527#issuecomment-130903866 https://api.github.com/repos/pydata/xarray/issues/527 MDEyOklzc3VlQ29tbWVudDEzMDkwMzg2Ng== clarkfitzg 5356122 2015-08-14T00:47:54Z 2015-08-14T00:47:54Z MEMBER

Here's what a 4d array looks like.

``` In [26]: t4d = xray.concat([t2, t2 + 50], pd.Index(['normal', 'hot'], name='fourth_dim'))

This is a 4d array

In [27]: t4d.coords Out[27]: Coordinates: * lat (lat) float32 75.0 72.5 70.0 67.5 65.0 62.5 60.0 57.5 55.0 ... * lon (lon) float32 200.0 202.5 205.0 207.5 210.0 212.5 215.0 ... * time (time) datetime64[ns] 2013-01-01 2013-03-04T12:00:00 * fourth_dim (fourth_dim) object 'normal' 'hot'

In [28]: g = xray.plot.FacetGrid(t4d, col='time', row='fourth_dim')

In [29]: g.map_dataarray(xray.plot.imshow, 'lon', 'lat') Out[29]: <xray.plot.facetgrid.FacetGrid at 0x10f5aad90> ```

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  faceted plots 100646364
130766241 https://github.com/pydata/xarray/pull/527#issuecomment-130766241 https://api.github.com/repos/pydata/xarray/issues/527 MDEyOklzc3VlQ29tbWVudDEzMDc2NjI0MQ== clarkfitzg 5356122 2015-08-13T17:17:05Z 2015-08-13T17:17:05Z MEMBER

@shoyer Here's what we currently have:

``` In [15]: g = xray.plot.FacetGrid(t, col='time', col_wrap=2)

In [16]: g.map_dataarray(xray.plot.contourf, 'lon', 'lat') Out[16]: <xray.plot.facetgrid.FacetGrid at 0x10de082d0> ```

Right now this assumes that the function for map_dataarray has the same signature as 2d xray plotting methods.

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  faceted plots 100646364

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