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- Saving zarr to remote location lower cases all data_vars · 3 ✖
id | html_url | issue_url | node_id | user | created_at | updated_at ▲ | author_association | body | reactions | performed_via_github_app | issue |
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860879523 | https://github.com/pydata/xarray/issues/5028#issuecomment-860879523 | https://api.github.com/repos/pydata/xarray/issues/5028 | MDEyOklzc3VlQ29tbWVudDg2MDg3OTUyMw== | joshmoore 88113 | 2021-06-14T17:58:36Z | 2021-06-14T17:58:36Z | NONE | A heads up that https://github.com/zarr-developers/zarr-python/pull/755 reverses the default behavior of |
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Saving zarr to remote location lower cases all data_vars 830507003 | |
799393304 | https://github.com/pydata/xarray/issues/5028#issuecomment-799393304 | https://api.github.com/repos/pydata/xarray/issues/5028 | MDEyOklzc3VlQ29tbWVudDc5OTM5MzMwNA== | fwrite 4426586 | 2021-03-15T12:50:33Z | 2021-03-15T13:05:40Z | NONE | The issue appears to be in Recently, a Coming back to my last example:
Work-around, instantiate the store first:
|
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Saving zarr to remote location lower cases all data_vars 830507003 | |
799381383 | https://github.com/pydata/xarray/issues/5028#issuecomment-799381383 | https://api.github.com/repos/pydata/xarray/issues/5028 | MDEyOklzc3VlQ29tbWVudDc5OTM4MTM4Mw== | fwrite 4426586 | 2021-03-15T12:31:03Z | 2021-03-15T12:31:03Z | NONE | Interestingly, the same applies to locally created and remotely opened data sets. The variables are recognized correctly from the consolidated metadata, but on opening are made lower case. A quick example: ```python import xarray as xr, numpy as np x, y, t = np.arange(500), np.arange(500), np.arange(0,500,6) xr.Dataset(
data_vars={'Group/Variable': (('t', 'y', 'x'), np.ones((t.size, x.size, y.size)))},
coords={'x': x, 'y': y, 'Time': t}
).to_zarr('/tmp/zarr2058', consolidated=True)
However, if we access the data via http, the values are not read correctly. To test, start a local webserver:
Open our array, the group and variable are properly cased (and derived from However, the problem appears to be in Zarr, not (only) in xarray:
Environment: Output of <tt>xr.show_versions()</tt>INSTALLED VERSIONS ------------------ commit: None python: 3.7.7 (default, Mar 23 2020, 22:36:06) [GCC 7.3.0] python-bits: 64 OS: Linux OS-release: 5.8.0-44-generic machine: x86_64 processor: x86_64 byteorder: little LC_ALL: None LANG: en_US.UTF-8 LOCALE: en_US.UTF-8 libhdf5: 1.10.4 libnetcdf: 4.6.1 xarray: 0.15.0 pandas: 1.1.3 numpy: 1.18.1 scipy: 1.4.1 netCDF4: 1.4.2 pydap: None h5netcdf: 0.10.0 h5py: 2.10.0 Nio: None zarr: 2.6.1 cftime: 1.4.1 nc_time_axis: None PseudoNetCDF: None rasterio: 1.1.0 cfgrib: None iris: None bottleneck: None dask: 2.13.0 distributed: 2.30.1 matplotlib: 3.3.2 cartopy: None seaborn: None numbagg: None setuptools: 52.0.0.post20210125 pip: 21.0.1 conda: None pytest: None IPython: 7.13.0 sphinx: None |
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Saving zarr to remote location lower cases all data_vars 830507003 |
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