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  • OpenDAP Documentation Example failing with RunTimeError · 6 ✖

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  • NONE · 6 ✖
id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
1374023636 https://github.com/pydata/xarray/issues/4925#issuecomment-1374023636 https://api.github.com/repos/pydata/xarray/issues/4925 IC_kwDOAMm_X85R5e_U aaron-kaplan 766406 2023-01-06T19:11:52Z 2023-01-06T19:11:52Z NONE

Thanks to the holiday lull, I finally found some time to finish implementing URL-decoding for querystrings in the IRI Data Library server software. The example now works for me with xarray 2022.12.0, netcdf4 1.6.2, and libnetcdf 4.8.1.

 
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   OpenDAP Documentation Example failing with RunTimeError 811409317
1039237763 https://github.com/pydata/xarray/issues/4925#issuecomment-1039237763 https://api.github.com/repos/pydata/xarray/issues/4925 IC_kwDOAMm_X8498YKD chiaweh2 11950284 2022-02-14T15:41:48Z 2022-02-14T15:41:48Z NONE

Thank you for the issue discussion and temporary solution from @scottyhq! I was able to use the temporary solution to get the data I needed from IRI at the moment. The example still generates error while I tried and have some similar error when downloading the NMME hindcasts. Hope the IRI software issue will be clear soon! 

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   OpenDAP Documentation Example failing with RunTimeError 811409317
977948373 https://github.com/pydata/xarray/issues/4925#issuecomment-977948373 https://api.github.com/repos/pydata/xarray/issues/4925 IC_kwDOAMm_X846Sk7V aaron-kaplan 766406 2021-11-24T14:48:02Z 2021-11-24T14:48:02Z NONE

The OPeNDAP server at iridl.ldeo.columbia.edu doesn't accept URL-encoded querystrings. It never did, but that used to be ok because older versions of netcdf-c didn't encode the querystrings. More recent versions do. So a change in netcdf-c is the proximal cause of the example breaking, but the root of the problem is on the server side.

We (IRI) are working on fixing the server software.

 
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   OpenDAP Documentation Example failing with RunTimeError 811409317
812365653 https://github.com/pydata/xarray/issues/4925#issuecomment-812365653 https://api.github.com/repos/pydata/xarray/issues/4925 MDEyOklzc3VlQ29tbWVudDgxMjM2NTY1Mw== Tinkaa 12556634 2021-04-02T07:09:12Z 2021-04-02T07:09:53Z NONE

Hi, did anyone in the meantime gain insights on the cause of this issue? @scottyhq @dopplershift @rabernat ? 

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   OpenDAP Documentation Example failing with RunTimeError 811409317
783353154 https://github.com/pydata/xarray/issues/4925#issuecomment-783353154 https://api.github.com/repos/pydata/xarray/issues/4925 MDEyOklzc3VlQ29tbWVudDc4MzM1MzE1NA== Tinkaa 12556634 2021-02-22T12:54:38Z 2021-02-22T12:54:38Z NONE

@scottyhq Sorry yes that was indeed the problem, was installing packages with pip and that caused incompatibility, thanks for looking into it. Would be great nevertheless to figure out the root of the issue. 

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   OpenDAP Documentation Example failing with RunTimeError 811409317
781968755 https://github.com/pydata/xarray/issues/4925#issuecomment-781968755 https://api.github.com/repos/pydata/xarray/issues/4925 MDEyOklzc3VlQ29tbWVudDc4MTk2ODc1NQ== Tinkaa 12556634 2021-02-19T09:58:11Z 2021-02-19T09:58:22Z NONE

Just confirming I have the same error/traceback with the example you gave. But this error persists when pinning netCDF4 to version 1.5.1.. Got to the issue because I got the same error when trying to clip another IRI dataset with OpenDAP.

Environment:

Output of xr.show_versions() 
$ INSTALLED VERSIONS
------------------
commit: None
python: 3.8.5 (default, Nov 18 2020, 15:31:37) 
[Clang 12.0.0 (clang-1200.0.31.1)]
python-bits: 64
OS: Darwin
OS-release: 20.3.0
machine: x86_64
processor: i386
byteorder: little
LC_ALL: None
LANG: None
LOCALE: None.UTF-8
libhdf5: 1.12.0
libnetcdf: 4.7.4

xarray: 0.16.2
pandas: 1.1.3
numpy: 1.19.1
scipy: 1.5.4
netCDF4: 1.5.0.1
pydap: installed
h5netcdf: None
h5py: None
Nio: None
zarr: None
cftime: 1.3.0
nc_time_axis: None
PseudoNetCDF: None
rasterio: 1.1.7
cfgrib: None
iris: None
bottleneck: None
dask: None
distributed: None
matplotlib: 3.3.1
cartopy: 0.18.0
seaborn: 0.11.0
numbagg: None
pint: None
setuptools: 50.3.2
pip: 20.3.3
conda: None
pytest: None
IPython: 7.19.0
sphinx: None
 
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   OpenDAP Documentation Example failing with RunTimeError 811409317

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