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  • Cannot write array larger than 4GB with SciPy netCDF backend · 2 ✖

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  • NONE · 2 ✖
id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
544312894 https://github.com/pydata/xarray/issues/3416#issuecomment-544312894 https://api.github.com/repos/pydata/xarray/issues/3416 MDEyOklzc3VlQ29tbWVudDU0NDMxMjg5NA== angelolab 56707780 2019-10-21T01:04:48Z 2019-10-21T01:04:48Z NONE

Got it, thanks everyone. I'll open this issue there. We'll try and work on getting our NetCDF4 compatibility issues addressed to avoid this space issue, as we are working with large imaging datasets.

 
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   Cannot write array larger than 4GB with SciPy netCDF backend 509285415
544183597 https://github.com/pydata/xarray/issues/3416#issuecomment-544183597 https://api.github.com/repos/pydata/xarray/issues/3416 MDEyOklzc3VlQ29tbWVudDU0NDE4MzU5Nw== ngreenwald 13770365 2019-10-19T18:19:08Z 2019-10-19T18:19:33Z NONE

Yes, you're right @max-sixty, seems like the actual IO is happening within scipy. Do you have any suggestions for how I might troubleshoot this further? Could I make a similar example that uses only the scipy netcdf functionality somehow to drill down into where the memory error is coming from?

 
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   Cannot write array larger than 4GB with SciPy netCDF backend 509285415

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