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  • dkobashi · 3 ✖

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  • IPython crash after xarray.opendataset : free():invalid next size (fast) · 3 ✖

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  • NONE · 3 ✖
id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
422396141 https://github.com/pydata/xarray/issues/2275#issuecomment-422396141 https://api.github.com/repos/pydata/xarray/issues/2275 MDEyOklzc3VlQ29tbWVudDQyMjM5NjE0MQ== dkobashi 8714949 2018-09-18T13:36:54Z 2018-09-18T13:36:54Z NONE

Your suggestion did not work. I got the following. Is there any other way to update netcdf4 without messing up the dependencies of other python tools? Thanks, -DJ ``` ~$ conda update netcdf4 Fetching package metadata ........... Solving package specifications: .

All requested packages already installed.

packages in environment at ~/anaconda2/envs/roms:

netcdf4 1.2.4 np113py27_0 

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   IPython crash after xarray.opendataset : free():invalid next size (fast) 339909651
422152422 https://github.com/pydata/xarray/issues/2275#issuecomment-422152422 https://api.github.com/repos/pydata/xarray/issues/2275 MDEyOklzc3VlQ29tbWVudDQyMjE1MjQyMg== dkobashi 8714949 2018-09-17T20:07:03Z 2018-09-17T20:07:03Z NONE

I use Anaconda python.

My conda version is as follow platform : linux-64 conda version : 4.3.32 conda is private : False conda-env version : 4.3.32 conda-build version : 3.0.27 python version : 2.7.14.final.0 requests version : 2.18.4

I attach xarray.show_versions() at the bottom. I see it uses the same version as the other on the post. I also attach the error I got below.

*** Error in `/home/dj/anaconda2/envs/roms/bin/python': free(): invalid next size (fast): 0x0000556928b744e0 ***

A funny thing is that I have no problem getting the data using netCDF4-python. The file size of the data is big (50-100GB. netCDF4 format), but again I was able to get the data with netCDF4-python. So I guess I need to update netCDF4-python, but I don't know how.

Thanks,

INSTALLED VERSIONS

commit: None python: 2.7.14.final.0 python-bits: 64 OS: Linux OS-release: 4.15.0-34-generic machine: x86_64 processor: x86_64 byteorder: little LC_ALL: None LANG: en_US.UTF-8 LOCALE: None.None

xarray: 0.10.8 pandas: 0.21.0 numpy: 1.13.3 scipy: 1.0.0 netCDF4: 1.2.4 h5netcdf: None h5py: 2.7.0 Nio: None zarr: None bottleneck: None cyordereddict: None dask: 0.16.0 distributed: 1.20.0 matplotlib: 2.2.2 cartopy: 0.15.0 seaborn: 0.9.0 setuptools: 36.5.0.post20170921 pip: 18.0 conda: None pytest: None IPython: 5.4.1 sphinx: None

 
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   IPython crash after xarray.opendataset : free():invalid next size (fast) 339909651
422116613 https://github.com/pydata/xarray/issues/2275#issuecomment-422116613 https://api.github.com/repos/pydata/xarray/issues/2275 MDEyOklzc3VlQ29tbWVudDQyMjExNjYxMw== dkobashi 8714949 2018-09-17T18:13:25Z 2018-09-17T18:13:25Z NONE

I am having the same problem. How can I update netCDF4 library? Thanks in advance. -DJ

 
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   IPython crash after xarray.opendataset : free():invalid next size (fast) 339909651

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