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  • Material-Scientist · 1 ✖

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  • Support for jagged array · 1 ✖

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id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
1457965323 https://github.com/pydata/xarray/issues/1482#issuecomment-1457965323 https://api.github.com/repos/pydata/xarray/issues/1482 IC_kwDOAMm_X85W5skL Material-Scientist 40465719 2023-03-07T10:58:12Z 2023-03-07T10:58:12Z NONE

As I am not aware of implementation details I am not sure there is a useful link, but maybe progress in #3213 supporting sparse arrays can solve also the jagged array issue.

Long time ago I asked there a question about how xarray supports sparse arrays. But what I actually meant were "Jagged Arrays". I just was not aware of that term and stumbled over it some days ago the very first time.

I also recently came across awkward/jagged/ragged arrays, and that's exactly how I would like to operate on multi-dimensional (2D in referenced case) sparse data:

Instead of allocating memory with NaNs, empty slots are just not materialized by using pd.SparseDtype("float", np.nan) dtype.

You basically create a dense duck array from sparse dtypes, as the Pandas sparse user guide shows:

So, all the shape, dtype, and ndim requirements are satisfied, and xarray could implement this as a duck array.

And while you can already wrap sparse duck arrays with xr.Variable, I'm not sure if the wrapper maintains the dtype: 

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   Support for jagged array 243964948

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