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  • read ncml files to create multifile datasets · 8 ✖

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1567154608 https://github.com/pydata/xarray/issues/2697#issuecomment-1567154608 https://api.github.com/repos/pydata/xarray/issues/2697 IC_kwDOAMm_X85daOGw keewis 14808389 2023-05-29T13:41:37Z 2023-05-29T13:41:37Z MEMBER

closing, since anything still missing should be feature requests for xncml

 
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   read ncml files to create multifile datasets 401874795
1326436762 https://github.com/pydata/xarray/issues/2697#issuecomment-1326436762 https://api.github.com/repos/pydata/xarray/issues/2697 IC_kwDOAMm_X85PD9Ga keewis 14808389 2022-11-24T13:12:36Z 2022-11-24T13:12:36Z MEMBER

I'd assume that xncml has never been released (there's an issue suggesting the release of version 0.1), so obviously there's no package on PyPI. You can try installing from github: bash pip install git+https://github.com/xarray-contrib/xncml.git to see if that gives you something to work with, otherwise I'd wait for any of the devs to get back to you (most likely in the issue you opened on the xncml repo)

 
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   read ncml files to create multifile datasets 401874795
1176866026 https://github.com/pydata/xarray/issues/2697#issuecomment-1176866026 https://api.github.com/repos/pydata/xarray/issues/2697 IC_kwDOAMm_X85GJYzq andersy005 13301940 2022-07-06T23:53:55Z 2022-07-06T23:53:55Z MEMBER

Ok, another option would be to add that to xncml

@andersy005 What do you think ?

@huard, I haven't touched the codebase in that repo for three years 😃... So, I'm happy to transfer the xncml repo to xarray-contrib org and give you and anyone who wants access to it

 
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   read ncml files to create multifile datasets 401874795
1176808719 https://github.com/pydata/xarray/issues/2697#issuecomment-1176808719 https://api.github.com/repos/pydata/xarray/issues/2697 IC_kwDOAMm_X85GJK0P shoyer 1217238 2022-07-06T22:21:48Z 2022-07-06T22:21:48Z MEMBER

Maybe a separate project in xarray-contrib would make sense?

I would be reluctant to add this into Xarray proper if we need a new external dependency for reading XML files.

On Wed, Jul 6, 2022 at 2:37 PM David Huard @.***> wrote:

I've got a first draft that parses an NcML document and spits out an xarray.Dataset. It does not cover all the NcML syntax, but the essential elements are there.

It uses xsdata https://xsdata.readthedocs.io/en/latest/ to parse the XML, using a datamodel automatically generated from the NcML 2-2 schema. I've scrapped test files from the netcdf-java https://github.com/Unidata/netcdf-java repo to create a test suite.

Wondering what's the best place to host the code, tests and test data so others may give it a spin ?

— Reply to this email directly, view it on GitHub https://github.com/pydata/xarray/issues/2697#issuecomment-1176775280, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAJJFVW32WV5YKZZP7KFVBTVSX4BZANCNFSM4GRUVDBQ . You are receiving this because you were mentioned.Message ID: @.***> 

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   read ncml files to create multifile datasets 401874795
686543493 https://github.com/pydata/xarray/issues/2697#issuecomment-686543493 https://api.github.com/repos/pydata/xarray/issues/2697 MDEyOklzc3VlQ29tbWVudDY4NjU0MzQ5Mw== rabernat 1197350 2020-09-03T14:47:10Z 2020-09-03T14:47:10Z MEMBER

Thanks for reviving this @huard!

FWIW, I think it's best for this sort of utility to live in its own small standalone package, which I have referred to as "xarray-mergetool" in the past. NCML could be one special case of the things it could it. It would also be very useful for intake-esm.

We have also discussed this in https://github.com/NCAR/esm-collection-spec/issues/12

We should have some bandwidth to work on this over the next year via the pangeo-forge project.

 
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   read ncml files to create multifile datasets 401874795
484760579 https://github.com/pydata/xarray/issues/2697#issuecomment-484760579 https://api.github.com/repos/pydata/xarray/issues/2697 MDEyOklzc3VlQ29tbWVudDQ4NDc2MDU3OQ== shoyer 1217238 2019-04-19T04:00:04Z 2019-04-19T04:00:04Z MEMBER

I have not thought much about APIs yet.

 
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   read ncml files to create multifile datasets 401874795
484231843 https://github.com/pydata/xarray/issues/2697#issuecomment-484231843 https://api.github.com/repos/pydata/xarray/issues/2697 MDEyOklzc3VlQ29tbWVudDQ4NDIzMTg0Mw== andersy005 13301940 2019-04-17T19:38:19Z 2019-04-17T19:38:19Z MEMBER

Any updates regarding this?

A while ago @rabernat mentioned that @dopplershift was potentially interested in working on implementing this feature in xarray in https://github.com/pangeo-data/esgf2xarray/issues/1#issuecomment-470707112

I am interested in helping out with getting this feature in xarray. I tried finding Python tools that provide NcML functionality and the ones I found namely:

seem to be outdated and unmaintained.

In the meantime, I've been experimenting with some basics of NcML: https://nbviewer.jupyter.org/github/NCAR/xncml/blob/master/docs/source/tutorial.ipynb

With guidance, input and feedback on what the API is expected to look like in xarray, I'd be more than happy to work on this moving forward

 
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   read ncml files to create multifile datasets 401874795
456503505 https://github.com/pydata/xarray/issues/2697#issuecomment-456503505 https://api.github.com/repos/pydata/xarray/issues/2697 MDEyOklzc3VlQ29tbWVudDQ1NjUwMzUwNQ== shoyer 1217238 2019-01-22T18:11:01Z 2019-01-22T18:11:01Z MEMBER

+1 for adding this to xarray. to_ncml would also be nice to have.

 
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   read ncml files to create multifile datasets 401874795

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