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- Enable Append/concat to existing zarr datastore · 4 ✖
id | html_url | issue_url | node_id | user | created_at | updated_at ▲ | author_association | body | reactions | performed_via_github_app | issue |
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442052347 | https://github.com/pydata/xarray/issues/2022#issuecomment-442052347 | https://api.github.com/repos/pydata/xarray/issues/2022 | MDEyOklzc3VlQ29tbWVudDQ0MjA1MjM0Nw== | rabernat 1197350 | 2018-11-27T13:09:43Z | 2018-11-27T13:09:43Z | MEMBER |
Patience...or action. Anyone is welcome and encouraged to submit a pull request on this topic. Xarray is a volunteer effort. |
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Enable Append/concat to existing zarr datastore 309227775 | |
430792980 | https://github.com/pydata/xarray/issues/2022#issuecomment-430792980 | https://api.github.com/repos/pydata/xarray/issues/2022 | MDEyOklzc3VlQ29tbWVudDQzMDc5Mjk4MA== | shoyer 1217238 | 2018-10-17T21:17:11Z | 2018-10-17T21:17:11Z | MEMBER |
I'm pretty sure the coordinates will just get overwritten, too, at least as long as the coordinate arrays have the same shape. If they have different shapes, you probably will get an error. We certainly don't do any checks for alignment currently.
This is only case I would try to solve to the initial implementation. It's probably 20% of the work (to add a keyword argument like If we need alignment, I'm sure we could make that work in a follow-up. Certainly it would be less error prone to use. |
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Enable Append/concat to existing zarr datastore 309227775 | |
430780110 | https://github.com/pydata/xarray/issues/2022#issuecomment-430780110 | https://api.github.com/repos/pydata/xarray/issues/2022 | MDEyOklzc3VlQ29tbWVudDQzMDc4MDExMA== | rabernat 1197350 | 2018-10-17T20:37:28Z | 2018-10-17T20:37:28Z | MEMBER | We may have people interested in working on this soon. I think we have some details to sort out regarding the api for appending. The most generic case looks something like this ```python ds1 = xr.open_dataset('file1.nc') file2.nc already existsds1.to_netcdf('file2.nc', mode='a+') ``` We need to figure out what should happen under different circumstances. Some cases are:
- We are just adding or completely overwriting variables. This works currently (from the docs: "If mode=’a’, existing variables will be overwritten"). But I'm not sure what happens if there is a conflict between coordinates among the new and old variables.
- It seems like much of the logic for overlapping dimension should be able to be handled via |
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Enable Append/concat to existing zarr datastore 309227775 | |
377088567 | https://github.com/pydata/xarray/issues/2022#issuecomment-377088567 | https://api.github.com/repos/pydata/xarray/issues/2022 | MDEyOklzc3VlQ29tbWVudDM3NzA4ODU2Nw== | shoyer 1217238 | 2018-03-29T01:10:16Z | 2018-03-29T01:10:16Z | MEMBER | This would probably make sense to think about along-side support for appending along an existing dimension in a netCDF file (https://github.com/pydata/xarray/issues/1672). I can see a few potential ways to write the syntax. Probably supplying a range of indices along a dimension to write to would make the most sense, e.g., |
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Enable Append/concat to existing zarr datastore 309227775 |
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