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- API Design for Xarray Backends · 6 ✖
id | html_url | issue_url | node_id | user | created_at | updated_at ▲ | author_association | body | reactions | performed_via_github_app | issue |
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704053953 | https://github.com/pydata/xarray/issues/1970#issuecomment-704053953 | https://api.github.com/repos/pydata/xarray/issues/1970 | MDEyOklzc3VlQ29tbWVudDcwNDA1Mzk1Mw== | shoyer 1217238 | 2020-10-06T06:15:56Z | 2020-10-06T06:15:56Z | MEMBER | I wrote up a proposal for grouping together decoding options into a single argument: https://github.com/pydata/xarray/issues/4490. Feedback would be very welcome! |
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API Design for Xarray Backends 302806158 | |
370884840 | https://github.com/pydata/xarray/issues/1970#issuecomment-370884840 | https://api.github.com/repos/pydata/xarray/issues/1970 | MDEyOklzc3VlQ29tbWVudDM3MDg4NDg0MA== | shoyer 1217238 | 2018-03-06T18:43:10Z | 2020-06-09T01:20:04Z | MEMBER | Backend needs that have changed since I drafted an API refactor in https://github.com/pydata/xarray/pull/1087:
- pickle support, required to support backends with dask distributed
- caching for managing open files, required for efficiently loading data from multiple files at once (see It would be nice to figure out how to abstract away these details from backend authors as much as possible. Most of the ingredients for these features exist in |
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API Design for Xarray Backends 302806158 | |
515315204 | https://github.com/pydata/xarray/issues/1970#issuecomment-515315204 | https://api.github.com/repos/pydata/xarray/issues/1970 | MDEyOklzc3VlQ29tbWVudDUxNTMxNTIwNA== | jhamman 2443309 | 2019-07-26T05:32:43Z | 2019-07-26T05:32:43Z | MEMBER | @danielballan wrote a blog post on how entrypoints can be used for 3rd party libraries can register plugins: https://blog.danallan.com/posts/2019-07-24-use-entrypoints-more/. I'm thinking this could be a particularly convenient way to allow libraries to register new backend engines to Of course, we still need to come up with a standard API for backends but the entrypoint idea could be the solution to hooking them into xarray. |
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API Design for Xarray Backends 302806158 | |
372509209 | https://github.com/pydata/xarray/issues/1970#issuecomment-372509209 | https://api.github.com/repos/pydata/xarray/issues/1970 | MDEyOklzc3VlQ29tbWVudDM3MjUwOTIwOQ== | jhamman 2443309 | 2018-03-13T00:46:53Z | 2018-03-13T00:46:53Z | MEMBER | @darothen - not sure exactly. We probably just need to put in the machinery for the |
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API Design for Xarray Backends 302806158 | |
370921380 | https://github.com/pydata/xarray/issues/1970#issuecomment-370921380 | https://api.github.com/repos/pydata/xarray/issues/1970 | MDEyOklzc3VlQ29tbWVudDM3MDkyMTM4MA== | shoyer 1217238 | 2018-03-06T20:43:29Z | 2018-03-06T20:44:18Z | MEMBER |
A netCDF-like API is a good starting place for xarray backends, since our data model is strongly modeled on netCDF. But that's not quite unambiguous enough for us. There are lots of details like indexing, dtypes and locking that need awareness of both how xarray works and the specific backend. So I think we are unlikely to be able to eliminate the need for adapter classes.
Yes, this was a large point of h5netcdf, although there are also users of h5netcdf without xarray. The main reason why it's a separate project is facilitate separation of concerns: xarray backends should be about how to adapt storage systems to work with xarray, not focused on details of another file format. h5netcdf is now up to about 1500 lines of code (including tests), and that's definitely big enough that I'm happy I wrote it as a separate project. The full netCDF4 data model turns out to involve a fair amount of nuance. Alternatively, if adaptation to the netCDF data model is easy (e.g., <100 lines of code), then it may not be worth the separate package. This is currently the case for zarr. |
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370913422 | https://github.com/pydata/xarray/issues/1970#issuecomment-370913422 | https://api.github.com/repos/pydata/xarray/issues/1970 | MDEyOklzc3VlQ29tbWVudDM3MDkxMzQyMg== | rabernat 1197350 | 2018-03-06T20:16:14Z | 2018-03-06T20:16:14Z | MEMBER | What is the role of the netCDF API in the backend API? My understanding of the point of h5netcdf was to provide a netCDF-like interface for HDF5, thereby making it easier to interface with xarray. So one potential answer to the backend API question is simply: make a netCDF-like interface for your library and then xarray can use it. However we still need a separate h5netcdf backend within xarray, so this design is perhaps not as clean as we would like. |
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