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  • jhamman · 5 ✖

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  • fix to_netcdf append bug (GH1215) · 5 ✖

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id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
339198772 https://github.com/pydata/xarray/pull/1609#issuecomment-339198772 https://api.github.com/repos/pydata/xarray/issues/1609 MDEyOklzc3VlQ29tbWVudDMzOTE5ODc3Mg== jhamman 2443309 2017-10-25T02:56:55Z 2017-10-25T02:56:55Z MEMBER

@shoyer - take another look. I have basically merged our two ideas and refactored the roundtrip tests. Tests are still failing but not for py2.7, on appveyor, or py3.6 locally.

 
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   fix to_netcdf append bug (GH1215) 262930380
339005604 https://github.com/pydata/xarray/pull/1609#issuecomment-339005604 https://api.github.com/repos/pydata/xarray/issues/1609 MDEyOklzc3VlQ29tbWVudDMzOTAwNTYwNA== jhamman 2443309 2017-10-24T14:17:27Z 2017-10-24T14:17:27Z MEMBER

@shoyer - ready for final review.

 
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   fix to_netcdf append bug (GH1215) 262930380
338363428 https://github.com/pydata/xarray/pull/1609#issuecomment-338363428 https://api.github.com/repos/pydata/xarray/issues/1609 MDEyOklzc3VlQ29tbWVudDMzODM2MzQyOA== jhamman 2443309 2017-10-21T04:35:55Z 2017-10-21T04:35:55Z MEMBER

Question for those who are familiar with the scipy backend. I have a few failing tests here on the scipy backend and I'm not really sure what's going on. It seems like it could be related to the mmap feature in scipy.

 
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   fix to_netcdf append bug (GH1215) 262930380
337754946 https://github.com/pydata/xarray/pull/1609#issuecomment-337754946 https://api.github.com/repos/pydata/xarray/issues/1609 MDEyOklzc3VlQ29tbWVudDMzNzc1NDk0Ng== jhamman 2443309 2017-10-18T23:17:48Z 2017-10-18T23:17:48Z MEMBER

@fmaussion - I've updated the append logic slightly. I'm wondering what you think? This version more aggressively overwrites existing variables (data_vars and coords).

 
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   fix to_netcdf append bug (GH1215) 262930380
335518624 https://github.com/pydata/xarray/pull/1609#issuecomment-335518624 https://api.github.com/repos/pydata/xarray/issues/1609 MDEyOklzc3VlQ29tbWVudDMzNTUxODYyNA== jhamman 2443309 2017-10-10T15:50:09Z 2017-10-10T15:50:09Z MEMBER

@fmaussion - you bring up a good point. There are two scenarios here.

1) appending to a file with existing data variables 2) appending to a file with existing coordinate variables

I'm wondering if we should disallow 1, in favor of being more explicit. So:

```Python list_of_vars_to_append = ['var1', 'var2'] ds[list_of_vars_to_append].to_netcdf(filename, mode='a')

if either var1 or var2 are in filename, raise an error?

`` as apposed to the current behavior which would silently skip all vars already infilenameand not inlist_of_vars_to_append`.

 
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   fix to_netcdf append bug (GH1215) 262930380

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