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  • Problems opening ROMS restart format files · 4 ✖

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id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
287567981 https://github.com/pydata/xarray/issues/1313#issuecomment-287567981 https://api.github.com/repos/pydata/xarray/issues/1313 MDEyOklzc3VlQ29tbWVudDI4NzU2Nzk4MQ== rabernat 1197350 2017-03-18T19:13:19Z 2017-03-18T19:13:19Z MEMBER

@dhruvbalwada, if you can't import netCDF4, you need to look at your conda environment and make sure all the necessary packages are installed. Your error indicates some sort of library dependency issue which should hypothetically have been resolved by conda. Here is the environment used for testing xarray with python 2.7. 

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   Problems opening ROMS restart format files 215162161
287551201 https://github.com/pydata/xarray/issues/1313#issuecomment-287551201 https://api.github.com/repos/pydata/xarray/issues/1313 MDEyOklzc3VlQ29tbWVudDI4NzU1MTIwMQ== fmaussion 10050469 2017-03-18T14:53:44Z 2017-03-18T14:53:44Z MEMBER

The later error says that your NetCDF4 library isn't properly installed. But the file problem might be unrelated, I'd need to have a look at the file.

 
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   Problems opening ROMS restart format files 215162161
287550369 https://github.com/pydata/xarray/issues/1313#issuecomment-287550369 https://api.github.com/repos/pydata/xarray/issues/1313 MDEyOklzc3VlQ29tbWVudDI4NzU1MDM2OQ== fmaussion 10050469 2017-03-18T14:40:13Z 2017-03-18T14:40:13Z MEMBER

For some reason the bug comes form the scipy engine. What happens if you do:

xr.open_dataset(os.path.join(ddir, 'PHY_FLUXES_FILES/roms_dia_avg_y17.nc'), engine='netcdf4')

?

Could you send us one of your files?

 
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   Problems opening ROMS restart format files 215162161
287531674 https://github.com/pydata/xarray/issues/1313#issuecomment-287531674 https://api.github.com/repos/pydata/xarray/issues/1313 MDEyOklzc3VlQ29tbWVudDI4NzUzMTY3NA== fmaussion 10050469 2017-03-18T10:02:00Z 2017-03-18T10:02:00Z MEMBER

Could you try these two things, too? - install NetCDF4 - open a single file with open_dataset instead of open_mfdataset

 
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   Problems opening ROMS restart format files 215162161

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