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  • Dataset.groupby() doesn't preserve variables order · 6 ✖

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id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
344386257 https://github.com/pydata/xarray/issues/1042#issuecomment-344386257 https://api.github.com/repos/pydata/xarray/issues/1042 MDEyOklzc3VlQ29tbWVudDM0NDM4NjI1Nw== jhamman 2443309 2017-11-14T20:23:22Z 2017-11-14T20:23:22Z MEMBER

@chris-b1 - I think you're seeing the issue described in #757.

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  Dataset.groupby() doesn't preserve variables order 181881219
257814934 https://github.com/pydata/xarray/issues/1042#issuecomment-257814934 https://api.github.com/repos/pydata/xarray/issues/1042 MDEyOklzc3VlQ29tbWVudDI1NzgxNDkzNA== fmaussion 10050469 2016-11-02T09:34:46Z 2016-11-02T09:34:46Z MEMBER

Closed via https://github.com/pydata/xarray/pull/1049

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  Dataset.groupby() doesn't preserve variables order 181881219
253936119 https://github.com/pydata/xarray/issues/1042#issuecomment-253936119 https://api.github.com/repos/pydata/xarray/issues/1042 MDEyOklzc3VlQ29tbWVudDI1MzkzNjExOQ== shoyer 1217238 2016-10-14T22:35:56Z 2016-10-14T22:35:56Z MEMBER

So the tricky part here is that it's not obvious what is breaking here. One clue is that reducing doesn't seem to be necessary -- I can reproduce this just with applying an identity transform:

``` In [6]: identity = lambda x: x

In [7]: ds.groupby('t').apply(identity) Out[7]: <xarray.Dataset> Dimensions: (t: 10) Coordinates: * t (t) int64 0 1 2 3 4 5 6 7 8 9 Data variables: a (t) int64 0 1 2 3 4 5 6 7 8 9 c (t) int64 0 1 2 3 4 5 6 7 8 9 b (t) int64 0 1 2 3 4 5 6 7 8 9 ```

Actually, it looks like it's probably a concat bug:

``` In [17]: gb = ds.groupby('t')

In [18]: grouped = [v for _, v in gb]

In [20]: [list(g.data_vars) for g in grouped] Out[20]: [['a', 'b', 'c'], ['a', 'b', 'c'], ['a', 'b', 'c'], ['a', 'b', 'c'], ['a', 'b', 'c'], ['a', 'b', 'c'], ['a', 'b', 'c'], ['a', 'b', 'c'], ['a', 'b', 'c'], ['a', 'b', 'c']]

In [21]: xr.concat(grouped, dim='t') Out[21]: <xarray.Dataset> Dimensions: (t: 10) Coordinates: * t (t) int64 0 1 2 3 4 5 6 7 8 9 Data variables: a (t) int64 0 1 2 3 4 5 6 7 8 9 c (t) int64 0 1 2 3 4 5 6 7 8 9 b (t) int64 0 1 2 3 4 5 6 7 8 9 ```

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  Dataset.groupby() doesn't preserve variables order 181881219
253932983 https://github.com/pydata/xarray/issues/1042#issuecomment-253932983 https://api.github.com/repos/pydata/xarray/issues/1042 MDEyOklzc3VlQ29tbWVudDI1MzkzMjk4Mw== fmaussion 10050469 2016-10-14T22:16:37Z 2016-10-14T22:16:37Z MEMBER

@shoyer I'd be happy to provide a fix if you want. Could you give a short pointer as to where the logic is implemented?

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  Dataset.groupby() doesn't preserve variables order 181881219
252506038 https://github.com/pydata/xarray/issues/1042#issuecomment-252506038 https://api.github.com/repos/pydata/xarray/issues/1042 MDEyOklzc3VlQ29tbWVudDI1MjUwNjAzOA== fmaussion 10050469 2016-10-09T19:13:49Z 2016-10-09T19:13:49Z MEMBER

Thanks @shoyer , here's a mwe:

``` python import xarray as xr import numpy as np ds = xr.Dataset() for vn in ['a', 'b', 'c']: ds[vn] = xr.DataArray(np.arange(10), dims=['t']) ds.groupby('t').mean()

<xarray.Dataset> Dimensions: (t: 10) Coordinates: * t (t) int64 0 1 2 3 4 5 6 7 8 9 Data variables: a (t) float64 0.0 1.0 2.0 3.0 4.0 5.0 6.0 7.0 8.0 9.0 c (t) float64 0.0 1.0 2.0 3.0 4.0 5.0 6.0 7.0 8.0 9.0 b (t) float64 0.0 1.0 2.0 3.0 4.0 5.0 6.0 7.0 8.0 9.0 ```

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  Dataset.groupby() doesn't preserve variables order 181881219
252505663 https://github.com/pydata/xarray/issues/1042#issuecomment-252505663 https://api.github.com/repos/pydata/xarray/issues/1042 MDEyOklzc3VlQ29tbWVudDI1MjUwNTY2Mw== shoyer 1217238 2016-10-09T19:06:39Z 2016-10-09T19:06:39Z MEMBER

This is probably a bug. Usually, we're pretty careful to always use OrderedDict internally for exactly this reason. Can you give a reproducible example?

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  Dataset.groupby() doesn't preserve variables order 181881219

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