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  • guziy · 4 ✖

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  • `xray.open_mfdataset` concatenates also variables without time dimension · 4 ✖

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  • CONTRIBUTOR · 4 ✖
id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
330592365 https://github.com/pydata/xarray/issues/438#issuecomment-330592365 https://api.github.com/repos/pydata/xarray/issues/438 MDEyOklzc3VlQ29tbWVudDMzMDU5MjM2NQ== guziy 900941 2017-09-19T16:16:57Z 2017-09-19T16:16:57Z CONTRIBUTOR

Thanks @shoyer: Is there a how to contribute guide? I basically look for how to write a test and run test to check if my adding this option did not break anything...

Cheers

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  `xray.open_mfdataset` concatenates also variables without time dimension 89268800
330580615 https://github.com/pydata/xarray/issues/438#issuecomment-330580615 https://api.github.com/repos/pydata/xarray/issues/438 MDEyOklzc3VlQ29tbWVudDMzMDU4MDYxNQ== guziy 900941 2017-09-19T15:39:53Z 2017-09-19T15:40:40Z CONTRIBUTOR

This seems to be working, and no deprecation warning... (But probably I have to sort paths...)

```python In [8]: ds = xarray.concat([xarray.open_dataset(p, chunks={"time": 100}) for p in paths], data_vars="minimal", dim="time")

In [9]: ds Out[9]: <xarray.Dataset> Dimensions: (time: 13505, x: 782, y: 808) Coordinates: * x (x) float64 -4.556e+06 -4.546e+06 -4.536e+06 ... * y (y) float64 4.98e+06 4.97e+06 4.96e+06 4.95e+06 ... * time (time) datetime64[ns] 1993-01-01T12:00:09.140797440 ... Data variables: lon (y, x) float64 156.5 156.5 156.6 156.6 156.7 ... lat (y, x) float64 58.55 58.64 58.72 58.81 58.9 ... lambert_conformal_conic int16 -32767 tmin (time, y, x) float64 nan nan nan nan nan nan ...

In [10]: lon = ds["lon"]

In [11]: lon.ndim Out[11]: 2 ``` Cheers

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  `xray.open_mfdataset` concatenates also variables without time dimension 89268800
330569786 https://github.com/pydata/xarray/issues/438#issuecomment-330569786 https://api.github.com/repos/pydata/xarray/issues/438 MDEyOklzc3VlQ29tbWVudDMzMDU2OTc4Ng== guziy 900941 2017-09-19T15:05:27Z 2017-09-19T15:05:49Z CONTRIBUTOR

Thanks @spencerahill : You are right, but the error message won't change, since the data_vars keyword is not known, and I am not able to change the dataset's attribute data_vars. I think I have to use concat explicitly...

Cheers

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  `xray.open_mfdataset` concatenates also variables without time dimension 89268800
330567549 https://github.com/pydata/xarray/issues/438#issuecomment-330567549 https://api.github.com/repos/pydata/xarray/issues/438 MDEyOklzc3VlQ29tbWVudDMzMDU2NzU0OQ== guziy 900941 2017-09-19T14:58:55Z 2017-09-19T14:58:55Z CONTRIBUTOR

Hi @shoyer:

where is this data_vars='minimal' set? or maybe I am using a wrong version of xarray? Here is what I get

```python

In [10]: ds = xarray.open_mfdataset("/snow3/huziy/Daymet_daily_derivatives/daymet_spatial_agg_tmin_10x10/daymet_v3_tmin_*.nc4", data_vars="minimum")

TypeError Traceback (most recent call last) <ipython-input-10-ba844206f74a> in <module>() ----> 1 ds = xarray.open_mfdataset("/snow3/huziy/Daymet_daily_derivatives/daymet_spatial_agg_tmin_10x10/daymet_v3_tmin_*.nc4", data_vars="minimum")

/snow3/huziy/Python/python_builds/anaconda3/envs/py3.6-a3/lib/python3.6/site-packages/xarray/backends/api.py in open_mfdataset(paths, chunks, concat_dim, compat, preprocess, engine, lock, **kwargs) 503 paths = sorted(glob(paths)) 504 else: --> 505 paths = [str(p) if isinstance(p, path_type) else p for p in paths] 506 507 if not paths:

/snow3/huziy/Python/python_builds/anaconda3/envs/py3.6-a3/lib/python3.6/site-packages/xarray/backends/api.py in <listcomp>(.0) 503 paths = sorted(glob(paths)) 504 else: --> 505 paths = [str(p) if isinstance(p, path_type) else p for p in paths] 506 507 if not paths:

TypeError: open_dataset() got an unexpected keyword argument 'data_vars'

In [11]: ds = xarray.open_mfdataset("/snow3/huziy/Daymet_daily_derivatives/daymet_spatial_agg_tmin_10x10/daymet_v3_tmin_*.nc4")

In [12]: ds.data_vars = "minimum"

AttributeError Traceback (most recent call last) <ipython-input-12-9026b067946d> in <module>() ----> 1 ds.data_vars = "minimum"

/snow3/huziy/Python/python_builds/anaconda3/envs/py3.6-a3/lib/python3.6/site-packages/xarray/core/common.py in setattr(self, name, value) 180 raise AttributeError( 181 "cannot set attribute %r on a %r object. Use setitem " --> 182 "style assignment (e.g., ds['name'] = ...) instead to " 183 "assign variables." % (name, type(self).name)) 184 object.setattr(self, name, value)

AttributeError: can't set attribute

In [13]: ds.data_vars Out[13]: Data variables: tmin (time, y, x) float64 nan nan nan nan nan nan ... lon (time, y, x) float64 156.5 156.5 156.6 156.6 ... lat (time, y, x) float64 58.55 58.64 58.72 58.81 ... lambert_conformal_conic (time) int64 -32767 -32767 -32767 -32767 -32767 ...

In [16]: xarray.version Out[16]: '0.9.6'

``` Cheers

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  `xray.open_mfdataset` concatenates also variables without time dimension 89268800

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