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  • mangecoeur · 1 ✖

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  • Error when rechunking from Zarr store · 1 ✖

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  • CONTRIBUTOR · 1 ✖
id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
795114188 https://github.com/pydata/xarray/issues/4380#issuecomment-795114188 https://api.github.com/repos/pydata/xarray/issues/4380 MDEyOklzc3VlQ29tbWVudDc5NTExNDE4OA== mangecoeur 743508 2021-03-10T09:00:48Z 2021-03-10T09:00:48Z CONTRIBUTOR

Running into the same issue, when I:

  1. Load input from a Zarr data source
  2. Queue some processing (delayed dask ufuncs)
  3. Re-chunk using chunk() to get the dask task size I want
  4. use to_zarr to trigger the calculation (dask distributed backend) and save to a new file on disk

I get the chunk size mismatch error which I solve by manually overwriting the encoding['chunks'] value, which seems unintuitive to me. Since I'm going from->to a zarr, I assumed that calling chunk() would set the chunk size for both the dask arrays and the zarr output, since calling to_zarr on a dask array will only work if the dask and zarr encoding chunk size match.

I didn't realize the overwrite_encoded_chunks option existed but it's also a bit confusing that to get the right chunksize on the output i need to set the overwrite option on the input.

 
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   Error when rechunking from Zarr store 686608969

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