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  • thewtex · 2 ✖

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  • Feature Request: Hierarchical storage and processing in xarray · 2 ✖

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  • CONTRIBUTOR · 2 ✖
id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
833535376 https://github.com/pydata/xarray/issues/4118#issuecomment-833535376 https://api.github.com/repos/pydata/xarray/issues/4118 MDEyOklzc3VlQ29tbWVudDgzMzUzNTM3Ng== thewtex 25432 2021-05-06T13:45:16Z 2021-05-06T13:45:16Z CONTRIBUTOR

For scientific imaging, i.e. biomicroscopy, medical imaging, where xarray compatibility is being considered in the NGFF, it would be helpful to avoid unnecessary divergence by ensuring the proposed hierarchical storage is compatible. This would mean:

  1. Each scale / group can be independently treated as an xarray.Dataset.
  2. They are organized in such a way that the collection of scales can be referenced as it is now, i.e. as a collection of paths,

{ “multiscales”: [ { “datasets” : [ {"path": "0"}, {"path": "1"}, {"path": "2"}, {"path": "3"}, {"path": "4"} ] “version” : “0.1” } ] }

 
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   Feature Request: Hierarchical storage and processing in xarray 628719058
776812965 https://github.com/pydata/xarray/issues/4118#issuecomment-776812965 https://api.github.com/repos/pydata/xarray/issues/4118 MDEyOklzc3VlQ29tbWVudDc3NjgxMjk2NQ== thewtex 25432 2021-02-10T15:58:30Z 2021-02-10T15:58:30Z CONTRIBUTOR

@jhamman @joshmoore a prototype to bring together XArray and OME-Zarr/NGFF with multiple groups: https://github.com/OpenImaging/miqa/blob/master/server/scripts/compress_encode.py

 
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   Feature Request: Hierarchical storage and processing in xarray 628719058

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