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  • OriolAbril · 3 ✖

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  • Feature Request: Hierarchical storage and processing in xarray · 3 ✖

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  • CONTRIBUTOR · 3 ✖
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1044853795 https://github.com/pydata/xarray/issues/4118#issuecomment-1044853795 https://api.github.com/repos/pydata/xarray/issues/4118 IC_kwDOAMm_X84-RzQj OriolAbril 23738400 2022-02-18T17:06:57Z 2022-02-18T17:06:57Z CONTRIBUTOR

I am not sure I completely understand option 2, but option 1 seems a better fit to what we are doing at ArviZ (so far we are managing quite well with the InferenceData mentioned above which is a collection of independent xarray datasets). In our case, well defined selection for multiple variables at the same time (i.e. at the dataset level) is very useful.

I was also wondering what changes (if any) would each option imply when using apply_ufunc

 
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   Feature Request: Hierarchical storage and processing in xarray 628719058
807892921 https://github.com/pydata/xarray/issues/4118#issuecomment-807892921 https://api.github.com/repos/pydata/xarray/issues/4118 MDEyOklzc3VlQ29tbWVudDgwNzg5MjkyMQ== OriolAbril 23738400 2021-03-26T02:39:24Z 2021-03-26T02:39:24Z CONTRIBUTOR

Here are some biomedical papers that are using ArviZ and therefore xarray even if most don't cite xarray and some don't cite ArviZ either. Topics are quite disperse: covid, psychology, biomolecules, oncology...

Some ArviZ recent biomedical citations * Arroyuelo, A., Vila, J., & Martin, O. A. (2020). Exploring the quality of protein structural models from a Bayesian perspective. bioRxiv. * Axen, S. D. (2020). Representing Ensembles of Molecules (Doctoral dissertation, UCSF). * Brauner, J. M., Mindermann, S., Sharma, M., Johnston, D., Salvatier, J., Gavenčiak, T., ... & Kulveit, J. (2021). Inferring the effectiveness of government interventions against COVID-19. Science, 371(6531). * Busch-Moreno, S., Tuomainen, J., & Vinson, D. (2020). Trait Anxiety Effects on Late Phase Threatening Speech Processing: Evidence from EEG. bioRxiv. * Busch-Moreno, S., Tuomainen, J., & Vinson, D. (2021). Semantic and prosodic threat processing in trait anxiety: is repetitive thinking influencing responses?. Cognition and Emotion, 35(1), 50-70. * Dehning, J., Zierenberg, J., Spitzner, F. P., Wibral, M., Neto, J. P., Wilczek, M., & Priesemann, V. (2020). Inferring change points in the spread of COVID-19 reveals the effectiveness of interventions. Science, 369(6500). * Heilbron, E., Martìn, O., & Fumagalli, E. (2020). Efectos protectores de los alimentos andinos contra el daño producido por el alcohol a nivel del epitelio intestinal, una aproximación estadística. Ciencia, Docencia y Tecnología, 31(61 nov-mar). * Legrand, N., Nikolova, N., Correa, C., Brændholt, M., Stuckert, A., Kildahl, N., ... & Allen, M. (2021). The heart rate discrimination task: a psychophysical method to estimate the accuracy and precision of interoceptive beliefs. bioRxiv. * Wang, Y. (2020, September). Data Analysis of Psychological Measurement of Intelligent Internet-assisted Sports Training based on Bio-Sensors. In 2020 International Conference on Smart Electronics and Communication (ICOSEC) (pp. 474-477). IEEE. * WASSERMAN, A., SHRAGER, J., & SHAPIRO, M. A Multilevel Bayesian Model for Precision Oncology. * Weindel, G., Anders, R., Alario, F. X., & Burle, B. (2020). Assessing model-based inferences in decision making with single-trial response time decomposition. Journal of Experimental Psychology: General. * Yamagata, Y. (2020). Simultaneous estimation of the effective reproducing number and the detection rate of COVID-19. arXiv e-prints, arXiv-2005. 
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   Feature Request: Hierarchical storage and processing in xarray 628719058
804676315 https://github.com/pydata/xarray/issues/4118#issuecomment-804676315 https://api.github.com/repos/pydata/xarray/issues/4118 MDEyOklzc3VlQ29tbWVudDgwNDY3NjMxNQ== OriolAbril 23738400 2021-03-23T07:16:28Z 2021-03-23T07:16:28Z CONTRIBUTOR

Not really sure if there is anything we can do from ArviZ to help with that, if there is let us know and we'll do our best cc @percygautam

 
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   Feature Request: Hierarchical storage and processing in xarray 628719058

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