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  • apatlpo · 2 ✖

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  • mfdataset fails at chunking after opening · 2 ✖

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  • CONTRIBUTOR · 2 ✖
id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
232115345 https://github.com/pydata/xarray/issues/896#issuecomment-232115345 https://api.github.com/repos/pydata/xarray/issues/896 MDEyOklzc3VlQ29tbWVudDIzMjExNTM0NQ== apatlpo 11750960 2016-07-12T17:18:38Z 2016-07-12T17:18:38Z CONTRIBUTOR

Along time_counter

 
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   mfdataset fails at chunking after opening 165104458
232114342 https://github.com/pydata/xarray/issues/896#issuecomment-232114342 https://api.github.com/repos/pydata/xarray/issues/896 MDEyOklzc3VlQ29tbWVudDIzMjExNDM0Mg== apatlpo 11750960 2016-07-12T17:15:14Z 2016-07-12T17:15:14Z CONTRIBUTOR

Thanks for your answer. You'll find below an output from ncdump in order to answer the part about data arrangement (I hope ...) Otherwise, we have:

dask 0.8.2 py27_0 defaults xarray 0.7.2 py27_0 defaults netcdf4 1.1.1 np18py27_0 defaults

Looking forward for any suggestions. cheers aurelien

``` netcdf NATL60-MJM155_y2008m01d09.5d_gridT { dimensions: x = 5422 ; y = 3454 ; deptht = 300 ; time_counter = UNLIMITED ; // (1 currently) time_bounds = 2 ; variables: float nav_lat(y, x) ; nav_lat:axis = "Y" ; nav_lat:standard_name = "latitude" ; nav_lat:long_name = "Latitude" ; nav_lat:units = "degrees_north" ; nav_lat:nav_model = "grid_T" ; nav_lat:_Storage = "chunked" ; nav_lat:_ChunkSizes = 12, 5422 ; float nav_lon(y, x) ; nav_lon:axis = "X" ; nav_lon:standard_name = "longitude" ; nav_lon:long_name = "Longitude" ; nav_lon:units = "degrees_east" ; nav_lon:nav_model = "grid_T" ; nav_lon:_Storage = "chunked" ; nav_lon:_ChunkSizes = 12, 5422 ; float deptht(deptht) ; deptht:axis = "Z" ; deptht:long_name = "Vertical T levels" ; deptht:units = "m" ; deptht:positive = "down" ; deptht:_Storage = "chunked" ; deptht:_ChunkSizes = 300 ; float votemper(time_counter, deptht, y, x) ; votemper:long_name = "temperature" ; votemper:units = "degC" ; votemper:online_operation = "average" ; votemper:interval_operation = "40s" ; votemper:interval_write = "5d" ; votemper:_FillValue = 0.f ; votemper:missing_value = 0.f ; votemper:coordinates = "time_centered deptht nav_lon nav_lat" ; votemper:_Storage = "chunked" ; votemper:_ChunkSizes = 1, 1, 12, 5422 ; votemper:_DeflateLevel = 1 ; double time_centered(time_counter) ; time_centered:standard_name = "time" ; time_centered:long_name = "Time axis" ; time_centered:title = "Time" ; time_centered:calendar = "gregorian" ; time_centered:units = "seconds since 1958-01-01 00:00:00" ; time_centered:time_origin = "1958-01-01 00:00:00" ; time_centered:bounds = "time_centered_bounds" ; time_centered:_Storage = "chunked" ; time_centered:_ChunkSizes = 1 ; double time_centered_bounds(time_counter, time_bounds) ; time_centered_bounds:_Storage = "chunked" ; time_centered_bounds:_ChunkSizes = 1, 2 ; double time_counter(time_counter) ; time_counter:axis = "T" ; time_counter:standard_name = "time" ; time_counter:long_name = "Time axis" ; time_counter:title = "Time" ; time_counter:calendar = "gregorian" ; time_counter:units = "seconds since 1958-01-01 00:00:00" ; time_counter:time_origin = "1958-01-01 00:00:00" ; time_counter:bounds = "time_counter_bounds" ; time_counter:_Storage = "chunked" ; time_counter:_ChunkSizes = 1 ; double time_counter_bounds(time_counter, time_bounds) ; time_counter_bounds:_Storage = "chunked" ; time_counter_bounds:_ChunkSizes = 1, 2 ; float vosaline(time_counter, deptht, y, x) ; vosaline:long_name = "salinity" ; vosaline:units = "psu" ; vosaline:online_operation = "average" ; vosaline:interval_operation = "40s" ; vosaline:interval_write = "5d" ; vosaline:_FillValue = 0.f ; vosaline:missing_value = 0.f ; vosaline:coordinates = "time_centered deptht nav_lon nav_lat" ; vosaline:_Storage = "chunked" ; vosaline:_ChunkSizes = 1, 1, 12, 5422 ; vosaline:_DeflateLevel = 1 ; float sossheig(time_counter, y, x) ; sossheig:long_name = "sea surface height" ; sossheig:units = "m" ; sossheig:online_operation = "average" ; sossheig:interval_operation = "40s" ; sossheig:interval_write = "5d" ; sossheig:_FillValue = 0.f ; sossheig:missing_value = 0.f ; sossheig:coordinates = "time_centered nav_lon nav_lat" ; sossheig:_Storage = "chunked" ; sossheig:_ChunkSizes = 1, 12, 5422 ;

// global attributes: :description = "ocean T grid variables" ; :conventions = "CF-1.1" ; :production = "An IPSL model" ; :start_date = 20040101 ; :output_frequency = "5d" ; :CONFIG = "NATL60" ; :CASE = "MJM155" ; :_Format = "netCDF-4" ; } ```

 
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   mfdataset fails at chunking after opening 165104458

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