issue_comments: 932253077
This data as json
| html_url | issue_url | id | node_id | user | created_at | updated_at | author_association | body | reactions | performed_via_github_app | issue |
|---|---|---|---|---|---|---|---|---|---|---|---|
| https://github.com/pydata/xarray/pull/5796#issuecomment-932253077 | https://api.github.com/repos/pydata/xarray/issues/5796 | 932253077 | IC_kwDOAMm_X843kQ2V | 14371165 | 2021-10-01T13:58:00Z | 2021-10-01T14:01:25Z | MEMBER | Getting a weird error now.
```
Run set -x
+ asv machine --yes
· No information stored about machine 'fv-az231-522'. I know about nothing.
I will now ask you some questions about this machine to identify it in the benchmarks.
1. machine: A unique name to identify this machine in the results.
May be anything, as long as it is unique across all the machines
used to benchmark this project. NOTE: If changed from the default,
it will no longer match the hostname of this machine, and you may
need to explicitly use the --machine argument to asv.
machine [fv-az231-522]: 2. os: The OS type and version of this machine. For example,
'Macintosh OS-X 10.8'.
os [Linux 5.8.0-1042-azure]: 3. arch: The generic CPU architecture of this machine. For example,
'i386' or 'x86_64'.
arch [x86_64]: 4. cpu: A specific description of the CPU of this machine, including
its speed and class. For example, 'Intel(R) Core(TM) i5-2520M CPU
@ 2.50GHz (4 cores)'.
cpu [Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz]: 5. num_cpu: The number of CPUs in the system. For example, '4'.
num_cpu [2]: 6. ram: The amount of physical RAM on this machine. For example,
'4GB'.
+ echo 'Baseline: ebfc6a3db0580cc11418e906766805ff4bf36455 (Illviljan:main)'
ram [7120800]: Baseline: ebfc6a3db0580cc11418e906766805ff4bf36455 (Illviljan:main)
+ echo 'Contender: 7af19db79493412bddc6ad9db768ce05c75d7297 (Illviljan:asv-benchmark-cron)'
++ which mamba
Contender: 7af19db79493412bddc6ad9db768ce05c75d7297 (Illviljan:asv-benchmark-cron)
+ export CONDA_EXE=/usr/share/miniconda3/condabin/mamba
+ CONDA_EXE=/usr/share/miniconda3/condabin/mamba
+ ASV_OPTIONS='--split --show-stderr --factor 1.5'
+ tee benchmarks.log
+ sed '/Traceback \|failed$\|PERFORMANCE DECREASED/ s/^/::error::/'
+ asv continuous --split --show-stderr --factor 1.5 ebfc6a3db0580cc11418e906766805ff4bf36455 7af19db79493412bddc6ad9db768ce05c75d7297
· Creating environments
· Discovering benchmarks
·· Uninstalling from conda-py3.8-bottleneck-dask-distributed-netcdf4-numpy-pandas-scipy
·· Building 7af19db7 for conda-py3.8-bottleneck-dask-distributed-netcdf4-numpy-pandas-scipy
·· Installing 7af19db7 into conda-py3.8-bottleneck-dask-distributed-netcdf4-numpy-pandas-scipy
·· Error running /home/runner/work/xarray/xarray/asv_bench/.asv/env/06e0f5dba81d6db545c0b3d92fe94a49/bin/python /home/runner/.local/lib/python3.8/site-packages/asv/benchmark.py discover /home/runner/work/xarray/xarray/asv_bench/benchmarks /tmp/tmp3sm5q3yv/result.json (exit status 1)
STDOUT -------->
STDERR -------->
Error: Traceback (most recent call last):
File "/home/runner/.local/lib/python3.8/site-packages/asv/benchmark.py", line 1315, in <module>
main()
File "/home/runner/.local/lib/python3.8/site-packages/asv/benchmark.py", line 1308, in main
commands[mode](args)
File "/home/runner/.local/lib/python3.8/site-packages/asv/benchmark.py", line 1004, in main_discover
list_benchmarks(benchmark_dir, fp)
File "/home/runner/.local/lib/python3.8/site-packages/asv/benchmark.py", line 989, in list_benchmarks
for benchmark in disc_benchmarks(root):
File "/home/runner/.local/lib/python3.8/site-packages/asv/benchmark.py", line 887, in disc_benchmarks
for module in disc_modules(root_name, ignore_import_errors=ignore_import_errors):
File "/home/runner/.local/lib/python3.8/site-packages/asv/benchmark.py", line 869, in disc_modules
for item in disc_modules(name, ignore_import_errors=ignore_import_errors):
File "/home/runner/.local/lib/python3.8/site-packages/asv/benchmark.py", line 857, in disc_modules
module = import_module(module_name)
File "/home/runner/work/xarray/xarray/asv_bench/.asv/env/06e0f5dba81d6db545c0b3d92fe94a49/lib/python3.8/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "<frozen importlib._bootstrap>", line 1014, in _gcd_import
File "<frozen importlib._bootstrap>", line 991, in _find_and_load
File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 671, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 843, in exec_module
File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
File "/home/runner/work/xarray/xarray/asv_bench/benchmarks/combine.py", line 3, in <module>
import xarray as xr
File "/home/runner/work/xarray/xarray/asv_bench/.asv/env/06e0f5dba81d6db545c0b3d92fe94a49/lib/python3.8/site-packages/xarray/__init__.py", line 3, in <module>
from . import testing, tutorial, ufuncs
File "/home/runner/work/xarray/xarray/asv_bench/.asv/env/06e0f5dba81d6db545c0b3d92fe94a49/lib/python3.8/site-packages/xarray/tutorial.py", line 13, in <module>
from .backends.api import open_dataset as _open_dataset
File "/home/runner/work/xarray/xarray/asv_bench/.asv/env/06e0f5dba81d6db545c0b3d92fe94a49/lib/python3.8/site-packages/xarray/backends/__init__.py", line 9, in <module>
from .h5netcdf_ import H5NetCDFStore
File "/home/runner/work/xarray/xarray/asv_bench/.asv/env/06e0f5dba81d6db545c0b3d92fe94a49/lib/python3.8/site-packages/xarray/backends/h5netcdf_.py", line 25, in <module>
from .netCDF4_ import (
File "/home/runner/work/xarray/xarray/asv_bench/.asv/env/06e0f5dba81d6db545c0b3d92fe94a49/lib/python3.8/site-packages/xarray/backends/netCDF4_.py", line 34, in <module>
import netCDF4
File "/home/runner/work/xarray/xarray/asv_bench/.asv/env/06e0f5dba81d6db545c0b3d92fe94a49/lib/python3.8/site-packages/netCDF4/__init__.py", line 3, in <module>
from ._netCDF4 import *
ImportError: /home/runner/work/xarray/xarray/asv_bench/.asv/env/06e0f5dba81d6db545c0b3d92fe94a49/lib/python3.8/site-packages/netCDF4/../../../libnetcdf.so.19: undefined symbol: H5Pset_fapl_ros3
·· Failed: trying different commit/environment
·· Uninstalling from conda-py3.8-bottleneck-dask-distributed-netcdf4-numpy-pandas-scipy
·· Building ebfc6a3d for conda-py3.8-bottleneck-dask-distributed-netcdf4-numpy-pandas-scipy
·· Installing ebfc6a3d into conda-py3.8-bottleneck-dask-distributed-netcdf4-numpy-pandas-scipy
·· Error running /home/runner/work/xarray/xarray/asv_bench/.asv/env/06e0f5dba81d6db545c0b3d92fe94a49/bin/python /home/runner/.local/lib/python3.8/site-packages/asv/benchmark.py discover /home/runner/work/xarray/xarray/asv_bench/benchmarks /tmp/tmpsjxq903z/result.json (exit status 1)
STDOUT -------->
STDERR -------->
Error: Traceback (most recent call last):
File "/home/runner/.local/lib/python3.8/site-packages/asv/benchmark.py", line 1315, in <module>
main()
File "/home/runner/.local/lib/python3.8/site-packages/asv/benchmark.py", line 1308, in main
commands[mode](args)
File "/home/runner/.local/lib/python3.8/site-packages/asv/benchmark.py", line 1004, in main_discover
list_benchmarks(benchmark_dir, fp)
File "/home/runner/.local/lib/python3.8/site-packages/asv/benchmark.py", line 989, in list_benchmarks
for benchmark in disc_benchmarks(root):
File "/home/runner/.local/lib/python3.8/site-packages/asv/benchmark.py", line 887, in disc_benchmarks
for module in disc_modules(root_name, ignore_import_errors=ignore_import_errors):
File "/home/runner/.local/lib/python3.8/site-packages/asv/benchmark.py", line 869, in disc_modules
for item in disc_modules(name, ignore_import_errors=ignore_import_errors):
File "/home/runner/.local/lib/python3.8/site-packages/asv/benchmark.py", line 857, in disc_modules
module = import_module(module_name)
File "/home/runner/work/xarray/xarray/asv_bench/.asv/env/06e0f5dba81d6db545c0b3d92fe94a49/lib/python3.8/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "<frozen importlib._bootstrap>", line 1014, in _gcd_import
File "<frozen importlib._bootstrap>", line 991, in _find_and_load
File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 671, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 843, in exec_module
File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
File "/home/runner/work/xarray/xarray/asv_bench/benchmarks/combine.py", line 3, in <module>
import xarray as xr
File "/home/runner/work/xarray/xarray/asv_bench/.asv/env/06e0f5dba81d6db545c0b3d92fe94a49/lib/python3.8/site-packages/xarray/__init__.py", line 3, in <module>
from . import testing, tutorial, ufuncs
File "/home/runner/work/xarray/xarray/asv_bench/.asv/env/06e0f5dba81d6db545c0b3d92fe94a49/lib/python3.8/site-packages/xarray/tutorial.py", line 13, in <module>
from .backends.api import open_dataset as _open_dataset
File "/home/runner/work/xarray/xarray/asv_bench/.asv/env/06e0f5dba81d6db545c0b3d92fe94a49/lib/python3.8/site-packages/xarray/backends/__init__.py", line 9, in <module>
from .h5netcdf_ import H5NetCDFStore
File "/home/runner/work/xarray/xarray/asv_bench/.asv/env/06e0f5dba81d6db545c0b3d92fe94a49/lib/python3.8/site-packages/xarray/backends/h5netcdf_.py", line 25, in <module>
from .netCDF4_ import (
File "/home/runner/work/xarray/xarray/asv_bench/.asv/env/06e0f5dba81d6db545c0b3d92fe94a49/lib/python3.8/site-packages/xarray/backends/netCDF4_.py", line 34, in <module>
import netCDF4
File "/home/runner/work/xarray/xarray/asv_bench/.asv/env/06e0f5dba81d6db545c0b3d92fe94a49/lib/python3.8/site-packages/netCDF4/__init__.py", line 3, in <module>
from ._netCDF4 import *
ImportError: /home/runner/work/xarray/xarray/asv_bench/.asv/env/06e0f5dba81d6db545c0b3d92fe94a49/lib/python3.8/site-packages/netCDF4/../../../libnetcdf.so.19: undefined symbol: H5Pset_fapl_ros3
·· Failed: trying different commit/environment
·· Uninstalling from conda-py3.8-dask-distributed-netcdf4-numpy-pandas-scipy
·· Building 7af19db7 for conda-py3.8-dask-distributed-netcdf4-numpy-pandas-scipy
·· Installing 7af19db7 into conda-py3.8-dask-distributed-netcdf4-numpy-pandas-scipy
·· Error running /home/runner/work/xarray/xarray/asv_bench/.asv/env/3aabcb0950276df5ae33a267529abdce/bin/python /home/runner/.local/lib/python3.8/site-packages/asv/benchmark.py discover /home/runner/work/xarray/xarray/asv_bench/benchmarks /tmp/tmpnxh5svbe/result.json (exit status 1)
STDOUT -------->
STDERR -------->
Error: Traceback (most recent call last):
File "/home/runner/.local/lib/python3.8/site-packages/asv/benchmark.py", line 1315, in <module>
main()
File "/home/runner/.local/lib/python3.8/site-packages/asv/benchmark.py", line 1308, in main
commands[mode](args)
File "/home/runner/.local/lib/python3.8/site-packages/asv/benchmark.py", line 1004, in main_discover
list_benchmarks(benchmark_dir, fp)
File "/home/runner/.local/lib/python3.8/site-packages/asv/benchmark.py", line 989, in list_benchmarks
for benchmark in disc_benchmarks(root):
File "/home/runner/.local/lib/python3.8/site-packages/asv/benchmark.py", line 887, in disc_benchmarks
for module in disc_modules(root_name, ignore_import_errors=ignore_import_errors):
File "/home/runner/.local/lib/python3.8/site-packages/asv/benchmark.py", line 869, in disc_modules
for item in disc_modules(name, ignore_import_errors=ignore_import_errors):
File "/home/runner/.local/lib/python3.8/site-packages/asv/benchmark.py", line 857, in disc_modules
module = import_module(module_name)
File "/home/runner/work/xarray/xarray/asv_bench/.asv/env/3aabcb0950276df5ae33a267529abdce/lib/python3.8/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "<frozen importlib._bootstrap>", line 1014, in _gcd_import
File "<frozen importlib._bootstrap>", line 991, in _find_and_load
File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 671, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 843, in exec_module
File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
File "/home/runner/work/xarray/xarray/asv_bench/benchmarks/combine.py", line 3, in <module>
import xarray as xr
File "/home/runner/work/xarray/xarray/asv_bench/.asv/env/3aabcb0950276df5ae33a267529abdce/lib/python3.8/site-packages/xarray/__init__.py", line 3, in <module>
from . import testing, tutorial, ufuncs
File "/home/runner/work/xarray/xarray/asv_bench/.asv/env/3aabcb0950276df5ae33a267529abdce/lib/python3.8/site-packages/xarray/tutorial.py", line 13, in <module>
from .backends.api import open_dataset as _open_dataset
File "/home/runner/work/xarray/xarray/asv_bench/.asv/env/3aabcb0950276df5ae33a267529abdce/lib/python3.8/site-packages/xarray/backends/__init__.py", line 9, in <module>
from .h5netcdf_ import H5NetCDFStore
File "/home/runner/work/xarray/xarray/asv_bench/.asv/env/3aabcb0950276df5ae33a267529abdce/lib/python3.8/site-packages/xarray/backends/h5netcdf_.py", line 25, in <module>
from .netCDF4_ import (
File "/home/runner/work/xarray/xarray/asv_bench/.asv/env/3aabcb0950276df5ae33a267529abdce/lib/python3.8/site-packages/xarray/backends/netCDF4_.py", line 34, in <module>
import netCDF4
File "/home/runner/work/xarray/xarray/asv_bench/.asv/env/3aabcb0950276df5ae33a267529abdce/lib/python3.8/site-packages/netCDF4/__init__.py", line 3, in <module>
from ._netCDF4 import *
ImportError: /home/runner/work/xarray/xarray/asv_bench/.asv/env/3aabcb0950276df5ae33a267529abdce/lib/python3.8/site-packages/netCDF4/../../../libnetcdf.so.19: undefined symbol: H5Pset_fapl_ros3
·· Failed: trying different commit/environment
·· Uninstalling from conda-py3.8-dask-distributed-netcdf4-numpy-pandas-scipy
·· Building ebfc6a3d for conda-py3.8-dask-distributed-netcdf4-numpy-pandas-scipy
·· Installing ebfc6a3d into conda-py3.8-dask-distributed-netcdf4-numpy-pandas-scipy
·· Error running /home/runner/work/xarray/xarray/asv_bench/.asv/env/3aabcb0950276df5ae33a267529abdce/bin/python /home/runner/.local/lib/python3.8/site-packages/asv/benchmark.py discover /home/runner/work/xarray/xarray/asv_bench/benchmarks /tmp/tmp_8pq_qyl/result.json (exit status 1)
STDOUT -------->
STDERR -------->
Error: Traceback (most recent call last):
File "/home/runner/.local/lib/python3.8/site-packages/asv/benchmark.py", line 1315, in <module>
main()
File "/home/runner/.local/lib/python3.8/site-packages/asv/benchmark.py", line 1308, in main
commands[mode](args)
File "/home/runner/.local/lib/python3.8/site-packages/asv/benchmark.py", line 1004, in main_discover
list_benchmarks(benchmark_dir, fp)
File "/home/runner/.local/lib/python3.8/site-packages/asv/benchmark.py", line 989, in list_benchmarks
for benchmark in disc_benchmarks(root):
File "/home/runner/.local/lib/python3.8/site-packages/asv/benchmark.py", line 887, in disc_benchmarks
for module in disc_modules(root_name, ignore_import_errors=ignore_import_errors):
File "/home/runner/.local/lib/python3.8/site-packages/asv/benchmark.py", line 869, in disc_modules
for item in disc_modules(name, ignore_import_errors=ignore_import_errors):
File "/home/runner/.local/lib/python3.8/site-packages/asv/benchmark.py", line 857, in disc_modules
module = import_module(module_name)
File "/home/runner/work/xarray/xarray/asv_bench/.asv/env/3aabcb0950276df5ae33a267529abdce/lib/python3.8/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "<frozen importlib._bootstrap>", line 1014, in _gcd_import
File "<frozen importlib._bootstrap>", line 991, in _find_and_load
File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 671, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 843, in exec_module
File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
File "/home/runner/work/xarray/xarray/asv_bench/benchmarks/combine.py", line 3, in <module>
import xarray as xr
File "/home/runner/work/xarray/xarray/asv_bench/.asv/env/3aabcb0950276df5ae33a267529abdce/lib/python3.8/site-packages/xarray/__init__.py", line 3, in <module>
from . import testing, tutorial, ufuncs
File "/home/runner/work/xarray/xarray/asv_bench/.asv/env/3aabcb0950276df5ae33a267529abdce/lib/python3.8/site-packages/xarray/tutorial.py", line 13, in <module>
from .backends.api import open_dataset as _open_dataset
File "/home/runner/work/xarray/xarray/asv_bench/.asv/env/3aabcb0950276df5ae33a267529abdce/lib/python3.8/site-packages/xarray/backends/__init__.py", line 9, in <module>
from .h5netcdf_ import H5NetCDFStore
File "/home/runner/work/xarray/xarray/asv_bench/.asv/env/3aabcb0950276df5ae33a267529abdce/lib/python3.8/site-packages/xarray/backends/h5netcdf_.py", line 25, in <module>
from .netCDF4_ import (
File "/home/runner/work/xarray/xarray/asv_bench/.asv/env/3aabcb0950276df5ae33a267529abdce/lib/python3.8/site-packages/xarray/backends/netCDF4_.py", line 34, in <module>
import netCDF4
File "/home/runner/work/xarray/xarray/asv_bench/.asv/env/3aabcb0950276df5ae33a267529abdce/lib/python3.8/site-packages/netCDF4/__init__.py", line 3, in <module>
from ._netCDF4 import *
ImportError: /home/runner/work/xarray/xarray/asv_bench/.asv/env/3aabcb0950276df5ae33a267529abdce/lib/python3.8/site-packages/netCDF4/../../../libnetcdf.so.19: undefined symbol: H5Pset_fapl_ros3
·· Failed to build the project and import the benchmark suite.
```
Might be related to * https://github.com/h5py/h5py/issues/1880 * https://github.com/conda-forge/h5py-feedstock/issues/92 |
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996475523 |