issue_comments: 443840119

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https://github.com/pydata/xarray/issues/2535#issuecomment-443840119 https://api.github.com/repos/pydata/xarray/issues/2535 443840119 MDEyOklzc3VlQ29tbWVudDQ0Mzg0MDExOQ== 10137 2018-12-03T19:33:17Z 2018-12-03T19:33:17Z NONE

I have similar problem, when importing rasterio in the same script (not even using it for anything). This fails with HDF error:

import xarray as xa
import numpy as np
#import netCDF4
import rasterio

ds = xa.Dataset()
ds['z'] = (('y', 'x'), np.zeros((100, 100), np.float32))
print(ds)
ds.to_netcdf('test.nc')
ds.close()

with xa.open_dataset('test.nc') as ds:
    print(ds)

If I import netCDF4 before rasterio it works fine (uncomment line 3). This is probably an issue with rasterio somehow.

I installed everything with pip:

$ pip install Cython
$ pip install netCDF4 xarray rasterio numpy

From pip freeze:

affine==2.2.1
attrs==18.2.0
cftime==1.0.3
Click==7.0
click-plugins==1.0.4
cligj==0.5.0
Cython==0.29.1
netCDF4==1.4.2
numpy==1.15.4
pandas==0.23.4
pyparsing==2.3.0
python-dateutil==2.7.5
pytz==2018.7
rasterio==1.0.11
six==1.11.0
snuggs==1.4.2
xarray==0.11.0

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