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https://github.com/pydata/xarray/issues/7647#issuecomment-1475743002 https://api.github.com/repos/pydata/xarray/issues/7647 1475743002 IC_kwDOAMm_X85X9g0a 5821660 2023-03-20T07:27:08Z 2023-03-20T07:27:08Z MEMBER

@wangshuaicumt To see what's going on this might be sufficient. It looks like the grids (or dimensions) of your two input datasets do not really match each other.

In consequence the merge-algorithm aligns the two inputs and introduces NaN at the places where the data is not defined at the resulting points, leaving you with these gaps in the output. (You can observe this in the dimension-sizes).

As this doesn't happen in my workflows I have no immediate help at hand and hope others will chime with some more guidance.

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